7RS6 | pdb_00007rs6

Cryo-EM structure of Kip3 (AMPPNP) bound to GMPCPP-Stabilized Microtubules

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E [auth D]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)
K [auth H]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
N [auth J]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)
N [auth J]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
Q [auth M]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
Q [auth M]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)
T [auth O]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)
T [auth O]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
Z [auth S]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)
Z [auth S]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
W [auth Q]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)
W [auth Q]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)
H [auth F]	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Tubulin nucleotide-binding domain-like	8044258	3001758	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Tubulin C-terminal domain-like	8036011	3001732	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth D]	e7rs6D1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
K [auth H]	e7rs6H1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
N [auth J]	e7rs6J1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
Q [auth M]	e7rs6M1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
T [auth O]	e7rs6O1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
Z [auth S]	e7rs6S1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
W [auth Q]	e7rs6Q1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
H [auth F]	e7rs6F1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
B	e7rs6B1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
C [auth K]	e7rs6K1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
F [auth a]	e7rs6a1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
I [auth b]	e7rs6b1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
L [auth c]	e7rs6c1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
O [auth d]	e7rs6d1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
R [auth e]	e7rs6e1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
U [auth f]	e7rs6f1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
X [auth g]	e7rs6g1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
AA [auth h]	e7rs6h1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
A	e7rs6A1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
J [auth G]	e7rs6G1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
M [auth I]	e7rs6I1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
P [auth L]	e7rs6L1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
S [auth N]	e7rs6N1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
V [auth P]	e7rs6P1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
Y [auth R]	e7rs6R1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
G [auth E]	e7rs6E1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)
D [auth C]	e7rs6C1	A: alpha arrays	X: putative RnfG subunit of electron transport complex	H: putative RnfG subunit of electron transport complex	T: Aspartate/ornithine carbamoyltransferase	F:	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	PF00091	Tubulin/FtsZ family, GTPase domain (Tubulin)	Tubulin/FtsZ family, GTPase domain	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...	This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.	Domain
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	PF03953	Tubulin C-terminal domain (Tubulin_C)	Tubulin C-terminal domain	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...	This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	Tubulin beta chain	structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization developmental process multicellular organismal process neuron migration cellular developmental process nervous system development cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization developmental process multicellular organismal process neuron migration cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development cell differentiation anatomical structure development cell migration cell motility animal gross anatomical part developmental process system development	cellular anatomical structure intracellular anatomical structure cytoplasm polymeric cytoskeletal fiber intracellular membraneless organelle intracellular organelle cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
AA [auth h], C [auth K], F [auth a], I [auth b], L [auth c], AA [auth h], C [auth K], F [auth a], I [auth b], L [auth c], O [auth d], R [auth e], U [auth f], X [auth g]	kinesin-8/ Kip3	-	-	-
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	Tubulin alpha-1B chain	structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization developmental process multicellular organismal process cellular developmental process nervous system development generation of neurons cellular process cell cycle mitotic cell cycle cellular component organization organelle organization microtubule cytoskeleton organization microtubule-based process cellular component organization or biogenesis cytoskeleton organization developmental process multicellular organismal process cellular developmental process nervous system development generation of neurons neurogenesis multicellular organism development neuron differentiation cell differentiation anatomical structure development animal gross anatomical part developmental process system development	cellular anatomical structure intracellular anatomical structure cytoplasm polymeric cytoskeletal fiber intracellular membraneless organelle intracellular organelle cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR017975	Tubulin, conserved site	Conserved Site
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR000217	Tubulin	Family
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR002453	Beta tubulin	Family
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR013838	Beta tubulin, autoregulation binding site	Binding Site
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
B, E [auth D], H [auth F], K [auth H], N [auth J], B, E [auth D], H [auth F], K [auth H], N [auth J], Q [auth M], T [auth O], W [auth Q], Z [auth S]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	IPR017975	Tubulin, conserved site	Conserved Site
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	IPR002452	Alpha tubulin	Family
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	IPR000217	Tubulin	Family
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
A, D [auth C], G [auth E], J [auth G], M [auth I], A, D [auth C], G [auth E], J [auth G], M [auth I], P [auth L], S [auth N], V [auth P], Y [auth R]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.