7R2M | pdb_00007r2m

SYNJ2BP complex with a synthetic Vangl2 peptide (9mer).

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth D]	F_UNCLASSIFIED	e7r2mD3	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth D]	F_UNCLASSIFIED	e7r2mD1	A: alpha arrays	X: Annexin (From Topology)	H: Annexin (From Topology)	T: Annexin	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth A]	F_UNCLASSIFIED	e7r2mA3	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth A]	F_UNCLASSIFIED	e7r2mA5	A: alpha arrays	X: Annexin (From Topology)	H: Annexin (From Topology)	T: Annexin	F: F_UNCLASSIFIED	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth D]	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (utative)
A [auth D]	1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V	domain 1	CATH (utative)
B [auth A]	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (utative)
B [auth A]	1.10.220.10	Mainly Alpha	Orthogonal Bundle	Annexin V	domain 1	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth D], B [auth A]	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth D], B [auth A]	Synaptojanin-2-binding protein,Annexin	-	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction cell communication Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation regulation of signal transduction cell communication Notch signaling pathway regulation of response to stimulus regulation of Notch signaling pathway regulation of cell communication cellular process signal transduction multicellular organismal process regulation of sprouting angiogenesis regulation of developmental process negative regulation of biological process angiogenesis regulation of vasculature development multicellular organism development tube morphogenesis anatomical structure development regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development system development developmental process regulation of multicellular organismal development blood vessel morphogenesis tube development negative regulation of blood vessel morphogenesis negative regulation of developmental process negative regulation of angiogenesis sprouting angiogenesis vasculature development circulatory system development anatomical structure morphogenesis negative regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis negative regulation of multicellular organismal process negative regulation of sprouting angiogenesis localization establishment of protein localization protein targeting establishment of localization negative regulation of locomotion regulation of cell motility endothelial cell migration negative regulation of endothelial cell migration regulation of locomotion regulation of cell migration negative regulation of cellular process regulation of endothelial cell migration negative regulation of cell motility cell migration cell motility locomotion negative regulation of cell migration regulation of localization import into cell regulation of cellular component organization regulation of transport transport regulation of vesicle-mediated transport vesicle-mediated transport cellular component organization cellular component organization or biogenesis endocytosis regulation of endocytosis negative regulation of signaling negative regulation of intracellular signal transduction intracellular signal transduction negative regulation of cell communication regulation of intracellular signal transduction intracellular signaling cassette negative regulation of response to stimulus regulation of MAPK cascade negative regulation of signal transduction negative regulation of ERK1 and ERK2 cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade negative regulation of MAPK cascade small GTPase-mediated signal transduction Rho protein signal transduction negative regulation of cell population proliferation cell population proliferation endothelial cell proliferation negative regulation of endothelial cell proliferation regulation of endothelial cell proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane
C [auth B], D [auth E]	Vangl2 peptide	-	localization apical protein localization macromolecule localization intracellular protein localization developmental process multicellular organismal process animal organ development renal system development multicellular organism development anatomical structure development cell migration cellular process cell migration involved in kidney development cell motility localization apical protein localization macromolecule localization intracellular protein localization developmental process multicellular organismal process animal organ development renal system development multicellular organism development anatomical structure development cell migration cellular process cell migration involved in kidney development cell motility kidney development system development regulation of cytoskeleton organization regulation of biological process regulation of cellular component organization regulation of cellular process regulation of actin filament-based process actin cytoskeleton organization biological regulation regulation of organelle organization cellular component organization organelle organization regulation of actin cytoskeleton organization actin filament-based process cellular component organization or biogenesis cytoskeleton organization epithelium development epidermis development molting cycle process hair cycle tissue development skin development skin epidermis development hair follicle development molting cycle hair cycle process heart development cardiac chamber morphogenesis heart morphogenesis ventricular septum development circulatory system development anatomical structure morphogenesis cardiac septum development cardiac septum morphogenesis ventricular septum morphogenesis cardiac chamber development membranous septum morphogenesis animal organ morphogenesis cardiac ventricle development cellular component disassembly regulation of synapse pruning cell junction disassembly synapse pruning regulation of synapse organization cell junction organization regulation of synapse structure or activity synapse organization regulation of biological quality branching morphogenesis of an epithelial tube respiratory tube development lateral sprouting from an epithelium tube morphogenesis lung morphogenesis lung development respiratory system development epithelial tube morphogenesis tube development lateral sprouting involved in lung morphogenesis morphogenesis of an epithelium tissue morphogenesis morphogenesis of a branching structure epithelial tube branching involved in lung morphogenesis morphogenesis of a branching epithelium embryonic epithelial tube formation chordate embryonic development tube formation embryo development epithelial tube formation primary neural tube formation establishment of tissue polarity embryo development ending in birth or egg hatching establishment of planar polarity of embryonic epithelium morphogenesis of a polarized epithelium morphogenesis of embryonic epithelium establishment of planar polarity neural tube development embryonic morphogenesis establishment of planar polarity involved in neural tube closure nervous system development neural tube closure neural tube formation anatomical structure formation involved in morphogenesis tube closure muscle structure development muscle organ development muscle tissue morphogenesis muscular septum morphogenesis muscle organ morphogenesis axis elongation developmental growth growth developmental growth involved in morphogenesis convergent extension involved in axis elongation convergent extension carbohydrate derivative biosynthetic process proteoglycan biosynthetic process heparan sulfate proteoglycan biosynthetic process heparan sulfate proteoglycan metabolic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process macromolecule biosynthetic process biosynthetic process protein O-linked glycosylation via xylose protein O-linked glycosylation metabolic process protein metabolic process macromolecule metabolic process proteoglycan metabolic process post-anal tail morphogenesis organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component assembly cilium assembly non-motile cilium assembly cilium organization cell projection assembly cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling Wnt signaling pathway, planar cell polarity pathway cell communication non-canonical Wnt signaling pathway signal transduction Wnt signaling pathway regulation of signaling regulation of Wnt signaling pathway regulation of signal transduction regulation of response to stimulus regulation of cell communication axonogenesis cellular developmental process plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation axon guidance axon development cell morphogenesis involved in neuron differentiation dopaminergic neuron axon guidance generation of neurons neuron projection guidance neuron development ear morphogenesis embryonic organ morphogenesis ear development sensory organ development sensory organ morphogenesis inner ear development cochlea development inner ear morphogenesis cochlea morphogenesis embryonic organ development planar dichotomous subdivision of terminal units involved in lung branching morphogenesis dichotomous subdivision of terminal units involved in lung branching dichotomous subdivision of an epithelial terminal unit orthogonal dichotomous subdivision of terminal units involved in lung branching morphogenesis serotonergic neuron axon guidance inner ear receptor cell development mechanoreceptor differentiation inner ear receptor cell differentiation inner ear receptor cell stereocilium organization wound healing response to stress response to wounding digestive system development digestive tract development digestive tract morphogenesis establishment of body hair or bristle planar orientation establishment of body hair planar orientation neural plate development convergent extension involved in gastrulation convergent extension involved in organogenesis morphogenesis of an epithelial sheet gastrulation convergent extension involved in neural plate elongation neural plate elongation neural plate morphogenesis glomerulus development nephron development somatic stem cell population maintenance maintenance of cell number stem cell population maintenance somatic stem cell division stem cell division cell division small GTPase-mediated signal transduction Rho protein signal transduction intracellular signal transduction intracellular signaling cassette kidney morphogenesis anterior/posterior pattern specification pattern specification process regionalization embryonic heart tube development embryonic heart tube morphogenesis heart looping determination of bilateral symmetry determination of left/right symmetry specification of symmetry determination of heart left/right asymmetry left/right pattern formation establishment or maintenance of bipolar cell polarity establishment or maintenance of epithelial cell apical/basal polarity establishment or maintenance of apical/basal cell polarity establishment or maintenance of cell polarity regulation of animal organ morphogenesis regulation of developmental process regulation of establishment of planar polarity regulation of anatomical structure morphogenesis	postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic specialization membrane postsynaptic specialization synapse membrane plasma membrane postsynaptic density membrane synaptic membrane cell periphery postsynaptic density postsynapse cellular anatomical structure neuron to neuron synapse organelle cell junction postsynaptic membrane asymmetric synapse plasma membrane region cell-cell junction anchoring junction apical part of cell apical plasma membrane basal part of cell basal plasma membrane basolateral plasma membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle COPII-coated ER to Golgi transport vesicle cytoplasmic vesicle coated vesicle cytoplasm vesicle glutamatergic synapse cell pole actin filament bundle intracellular membraneless organelle actin cytoskeleton actomyosin cytoskeleton membraneless organelle stress fiber contractile actin filament bundle lateral plasma membrane apical cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth D], B [auth A]	IPR036034	PDZ superfamily	Homologous Superfamily
A [auth D], B [auth A]	IPR050614	Synaptic Scaffolding LAP/MAGUK Families	Family
A [auth D], B [auth A]	IPR001478	PDZ domain	Domain
C [auth B], D [auth E]	IPR009539	Vang-like protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth D], B [auth A]	Pharos: P57105	brucellosis osteosarcoma Pick disease juvenile dermatomyositis ovarian cancer large cell medulloblastoma pancreatic ductal adenocarcinoma
C [auth B], D [auth E]	Pharos: Q9ULK5	neural tube defects, susceptibility to tethered spinal cord syndrome neural tube defect spina bifida malignant glioma Neural Tube Defects non-small cell lung carcinoma pilocytic astrocytoma anencephaly craniorachischisis diastematomyelia Graves disease iniencephaly large cell medulloblastoma medulloblastoma neural tube defects, susceptibility to tethered spinal cord syndrome neural tube defect spina bifida malignant glioma Neural Tube Defects non-small cell lung carcinoma pilocytic astrocytoma anencephaly craniorachischisis diastematomyelia Graves disease iniencephaly large cell medulloblastoma medulloblastoma oligodendroglioma pituitary cancer astrocytic tumor Currarino triad interstitial cystitis malignant ependymoma neurenteric cyst pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia primitive neuroectodermal tumor subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor cystic fibrosis glioblastoma isolated anencephaly/exencephaly

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.