Annotations: 7Q43

Crystal structure of RCC1-Like domain 2 of ubiquitin ligase HERC2 in complex with DXDKDED motif of dedicator of cytokinesis protein 10

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C [auth E]	tRNA-synt_2	e7q43E1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: tRNA-synt_2	ECOD (v295.2)
B [auth A]	tRNA-synt_2	e7q43A1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: tRNA-synt_2	ECOD (v295.2)
A [auth C]	tRNA-synt_2	e7q43C1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: tRNA-synt_2	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth A], C [auth E]	PF25390	RCC1-like domain (WD40_RLD)	RCC1-like domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth B], E [auth D], F	Dedicator of cytokinesis protein 10 peptide	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity biological regulation positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity multicellular organismal process B cell homeostasis multicellular organismal-level homeostasis leukocyte homeostasis homeostatic process positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity biological regulation positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity multicellular organismal process B cell homeostasis multicellular organismal-level homeostasis leukocyte homeostasis homeostatic process immune system process homeostasis of number of cells lymphocyte homeostasis regulation of biological process regulation of cell motility regulation of cellular process regulation of locomotion regulation of cell migration cellular process cell migration cell motility locomotion cellular response to stimulus regulation of signaling small GTPase-mediated signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction regulation of signal transduction regulation of Rho protein signal transduction intracellular signal transduction Rho protein signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication signal transduction cellular developmental process cell development mononuclear cell differentiation mature B cell differentiation B cell activation involved in immune response lymphocyte activation cell activation involved in immune response lymphocyte differentiation marginal zone B cell differentiation leukocyte activation B cell differentiation cell differentiation leukocyte activation involved in immune response anatomical structure development lymphocyte activation involved in immune response developmental process mature B cell differentiation involved in immune response immune response hemopoiesis B cell activation cell activation immune effector process leukocyte differentiation regulation of cellular component organization cellular component organization cellular component biogenesis multicellular organism development cellular component assembly regulation of postsynapse assembly cell junction assembly regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality system development postsynapse organization postsynapse assembly regulation of postsynapse organization nervous system development regulation of cellular component biogenesis regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly animal gross anatomical part developmental process cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development dendritic spine morphogenesis dendritic spine development plasma membrane bounded cell projection organization dendritic spine organization dendrite morphogenesis cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development neuron projection organization	cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol nucleus cellular anatomical structure membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen synapse cell junction glutamatergic synapse neuron spine neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse dendrite dendritic tree
A [auth C], B [auth A], C [auth E]	E3 ubiquitin-protein ligase HERC2	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity SUMO binding protein binding binding ubiquitin-like protein binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of protein stability biological regulation regulation of biological quality protein stabilization primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of protein stability biological regulation regulation of biological quality protein stabilization primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process cellular localization establishment of protein localization transport intracellular transport establishment of localization localization protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport	cellular anatomical structure membrane intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle cellular anatomical structure membrane intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth B], E [auth D], F	IPR043162	Dedicator of cytokinesis, C-terminal, lobe C	Homologous Superfamily
D [auth B], E [auth D], F	IPR001849	Pleckstrin homology domain	Domain
D [auth B], E [auth D], F	IPR060065	DOCK6-11, TPR domain	Domain
D [auth B], E [auth D], F	IPR026791	Dedicator of cytokinesis	Family
D [auth B], E [auth D], F	IPR046773	DOCKER, Lobe C	Domain
D [auth B], E [auth D], F	IPR046770	DOCKER, Lobe B	Domain
D [auth B], E [auth D], F	IPR011993	PH-like domain superfamily	Homologous Superfamily
D [auth B], E [auth D], F	IPR027357	DOCKER domain	Domain
D [auth B], E [auth D], F	IPR046769	DOCKER, Lobe A	Domain
D [auth B], E [auth D], F	IPR021816	Dedicator of cytokinesis C/D, N-terminal	Domain
D [auth B], E [auth D], F	IPR035892	C2 domain superfamily	Homologous Superfamily
D [auth B], E [auth D], F	IPR027007	C2 DOCK-type domain	Domain
D [auth B], E [auth D], F	IPR037809	Dedicator of cytokinesis D, C2 domain	Domain
D [auth B], E [auth D], F	IPR043161	Dedicator of cytokinesis, C-terminal, lobe A	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR037976	HERC2, APC10 domain	Domain
A [auth C], B [auth A], C [auth E]	IPR000408	Regulator of chromosome condensation, RCC1	Repeat
A [auth C], B [auth A], C [auth E]	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR006624	Beta-propeller repeat TECPR	Repeat
A [auth C], B [auth A], C [auth E]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR010606	Mib-herc2	Domain
A [auth C], B [auth A], C [auth E]	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR035983	HECT, E3 ligase catalytic domain	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR051625	Diverse Signaling and Regulatory Domain-Containing Protein	Family
A [auth C], B [auth A], C [auth E]	IPR000433	Zinc finger, ZZ-type	Domain
A [auth C], B [auth A], C [auth E]	IPR058923	RCC1-like domain	Domain
A [auth C], B [auth A], C [auth E]	IPR036400	Cytochrome b5-like heme/steroid binding domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR000569	HECT domain	Domain
A [auth C], B [auth A], C [auth E]	IPR037252	Mib/herc2 domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR041987	HERC2, zinc finger, ZZ-type	Domain
A [auth C], B [auth A], C [auth E]	IPR004939	APC10/DOC domain	Domain
A [auth C], B [auth A], C [auth E]	IPR021097	CPH domain	Domain
A [auth C], B [auth A], C [auth E]	IPR001199	Cytochrome b5-like heme/steroid binding domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
D [auth B], E [auth D], F	: Q96BY6	Liver Cirrhosis, Experimental psoriasis ulcerative colitis adenoma cutaneous lupus erythematosus ductal breast carcinoma in situ interstitial cystitis osteosarcoma pilocytic astrocytoma Sjogren syndrome attention deficit hyperactivity disorder, inattentive type cystic fibrosis glioblastoma invasive ductal breast carcinoma lung cancer Liver Cirrhosis, Experimental psoriasis ulcerative colitis adenoma cutaneous lupus erythematosus ductal breast carcinoma in situ interstitial cystitis osteosarcoma pilocytic astrocytoma Sjogren syndrome attention deficit hyperactivity disorder, inattentive type cystic fibrosis glioblastoma invasive ductal breast carcinoma lung cancer ovarian cancer progressive supranuclear palsy subependymal giant cell astrocytoma B-cell chronic lymphocytic leukemia Down syndrome IgA glomerulonephritis large cell medulloblastoma medulloblastoma Pick disease
A [auth C], B [auth A], C [auth E]	: O95714	developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis breast carcinoma Pick disease schizophrenia autosomal recessive non-syndromic intellectual disability corneal disease glioblastoma osteosarcoma