7Q43

Crystal structure of RCC1-Like domain 2 of ubiquitin ligase HERC2 in complex with DXDKDED motif of dedicator of cytokinesis protein 10

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	PF00415	e7q43C1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00415	ECOD (1.6)
B [auth A]	PF00415	e7q43A1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00415	ECOD (1.6)
C [auth E]	PF00415	e7q43E1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF00415	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth A], C [auth E]	PF00415	Regulator of chromosome condensation (RCC1) repeat (RCC1)	Regulator of chromosome condensation (RCC1) repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth A], C [auth E]	E3 ubiquitin-protein ligase HERC2	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity SUMO binding protein binding binding ubiquitin-like protein binding ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation organonitrogen compound metabolic process primary metabolic process organic substance metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal organonitrogen compound catabolic process catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process organic substance catabolic process protein localization cellular localization establishment of protein localization nitrogen compound transport transport organic substance transport intracellular transport establishment of localization localization protein transport establishment of localization in cell cellular macromolecule localization macromolecule localization intracellular protein transport DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process DNA repair	membrane cellular anatomical entity intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle centriole microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol cell periphery membrane cellular anatomical entity intracellular organelle microtubule organizing center intracellular anatomical structure cytoskeleton organelle intracellular non-membrane-bounded organelle centriole microtubule cytoskeleton non-membrane-bounded organelle cytoplasm cytosol cell periphery plasma membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
D [auth B], E [auth D], F	Dedicator of cytokinesis protein 10 peptide	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity biological regulation positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity multicellular organismal process B cell homeostasis multicellular organismal-level homeostasis leukocyte homeostasis homeostatic process positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity biological regulation positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity multicellular organismal process B cell homeostasis multicellular organismal-level homeostasis leukocyte homeostasis homeostatic process immune system process homeostasis of number of cells lymphocyte homeostasis regulation of biological process regulation of cell motility regulation of cellular process regulation of locomotion regulation of cell migration cellular process cell migration cell motility locomotion response to stimulus cellular developmental process cell development mononuclear cell differentiation mature B cell differentiation B cell activation involved in immune response lymphocyte activation cell activation involved in immune response lymphocyte differentiation marginal zone B cell differentiation leukocyte activation B cell differentiation cell differentiation leukocyte activation involved in immune response anatomical structure development lymphocyte activation involved in immune response developmental process mature B cell differentiation involved in immune response immune response hemopoiesis B cell activation cell activation immune effector process leukocyte differentiation cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis dendrite development dendritic spine morphogenesis cellular component organization or biogenesis synapse organization system development dendritic spine development plasma membrane bounded cell projection organization dendritic spine organization postsynapse organization dendrite morphogenesis nervous system development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis cell junction organization neuron development neuron projection organization cellular response to stimulus small GTPase-mediated signal transduction signaling intracellular signal transduction cell communication intracellular signaling cassette signal transduction	membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol membrane cellular anatomical entity extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen nuclear lumen synapse cell junction glutamatergic synapse neuron spine neuron projection dendritic spine plasma membrane bounded cell projection somatodendritic compartment cell projection postsynapse dendrite dendritic tree

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth A], C [auth E]	IPR037976	HERC2, APC10 domain	Domain
A [auth C], B [auth A], C [auth E]	IPR000408	Regulator of chromosome condensation, RCC1	Repeat
A [auth C], B [auth A], C [auth E]	IPR043145	Zinc finger, ZZ-type superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR006624	Beta-propeller repeat TECPR	Repeat
A [auth C], B [auth A], C [auth E]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR010606	Mib-herc2	Domain
A [auth C], B [auth A], C [auth E]	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR035983	HECT, E3 ligase catalytic domain	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR000433	Zinc finger, ZZ-type	Domain
A [auth C], B [auth A], C [auth E]	IPR036400	Cytochrome b5-like heme/steroid binding domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR000569	HECT domain	Domain
A [auth C], B [auth A], C [auth E]	IPR037252	Mib/herc2 domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR009091	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Homologous Superfamily
A [auth C], B [auth A], C [auth E]	IPR041987	HERC2, zinc finger, ZZ-type	Domain
A [auth C], B [auth A], C [auth E]	IPR004939	APC10/DOC domain	Domain
A [auth C], B [auth A], C [auth E]	IPR021097	CPH domain	Domain
A [auth C], B [auth A], C [auth E]	IPR001199	Cytochrome b5-like heme/steroid binding domain	Domain
D [auth B], E [auth D], F	IPR043162	Dedicator of cytokinesis, C-terminal, lobe C	Homologous Superfamily
D [auth B], E [auth D], F	IPR001849	Pleckstrin homology domain	Domain
D [auth B], E [auth D], F	IPR026791	Dedicator of cytokinesis	Family
D [auth B], E [auth D], F	IPR046773	DOCKER, Lobe C	Domain
D [auth B], E [auth D], F	IPR046770	DOCKER, Lobe B	Domain
D [auth B], E [auth D], F	IPR011993	PH-like domain superfamily	Homologous Superfamily
D [auth B], E [auth D], F	IPR027357	DOCKER domain	Domain
D [auth B], E [auth D], F	IPR046769	DOCKER, Lobe A	Domain
D [auth B], E [auth D], F	IPR021816	Dedicator of cytokinesis C/D, N-terminal	Domain
D [auth B], E [auth D], F	IPR035892	C2 domain superfamily	Homologous Superfamily
D [auth B], E [auth D], F	IPR027007	C2 DOCK-type domain	Domain
D [auth B], E [auth D], F	IPR037809	Dedicator of cytokinesis D, C2 domain	Domain
D [auth B], E [auth D], F	IPR043161	Dedicator of cytokinesis, C-terminal, lobe A	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C], B [auth A], C [auth E]	Pharos: O95714	developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis developmental delay with autism spectrum disorder and gait instability ulcerative colitis intellectual disability occupational asthma melanoma Prader-Willi syndrome skin basal cell carcinoma vitiligo age-related macular degeneration breast adenocarcinoma cutaneous melanoma Neoplasm of uncertain or unknown behavior of breast ovarian cancer squamous cell carcinoma amyotrophic lateral sclerosis breast carcinoma Pick disease schizophrenia autosomal recessive non-syndromic intellectual disability corneal disease glioblastoma osteosarcoma
D [auth B], E [auth D], F	Pharos: Q96BY6	Liver Cirrhosis, Experimental psoriasis ulcerative colitis adenoma cutaneous lupus erythematosus ductal breast carcinoma in situ interstitial cystitis osteosarcoma pilocytic astrocytoma Sjogren syndrome attention deficit hyperactivity disorder, inattentive type cystic fibrosis glioblastoma invasive ductal breast carcinoma lung cancer Liver Cirrhosis, Experimental psoriasis ulcerative colitis adenoma cutaneous lupus erythematosus ductal breast carcinoma in situ interstitial cystitis osteosarcoma pilocytic astrocytoma Sjogren syndrome attention deficit hyperactivity disorder, inattentive type cystic fibrosis glioblastoma invasive ductal breast carcinoma lung cancer ovarian cancer progressive supranuclear palsy subependymal giant cell astrocytoma B-cell chronic lymphocytic leukemia Down syndrome IgA glomerulonephritis large cell medulloblastoma medulloblastoma Pick disease