7PLU | pdb_00007plu

Cryo-EM structure of the actomyosin-V complex in the rigor state (central 3er/2er)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
H [auth E]SCOP2B SuperfamilyEF-hand 8032927 3001983 SCOP2B (2022-06-29)
D [auth B]SCOP2B SuperfamilyEF-hand 8032927 3001983 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyActin-like ATPases 8040509 3000092 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyActin-like ATPases 8040506 3000092 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyP-loop motor domain 8032926 3002036 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyMyosin s1 fragment, N-terminal domain 8032925 3000319 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMyosin s1 fragment, N-terminal domain 8032925 3000319 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyP-loop motor domain 8032926 3002036 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
H [auth E]e7pluE1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: DUF1870F:ECOD (20:10:01)
D [auth B]e7pluB1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: DUF1870F:ECOD (20:10:01)
I [auth G]e7pluG1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Arm, ARM_PUBF:ECOD (20:10:01)
Fe7pluF1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Arm, ARM_PUBF:ECOD (20:10:01)
B [auth C]e7pluC1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Arm, ARM_PUBF:ECOD (20:10:01)
E [auth D]e7pluD1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Arm, ARM_PUBF:ECOD (20:10:01)
Ae7pluA1 A: Family A G protein-coupled receptor-likeX: Family A G protein-coupled receptor-likeH: Family A G protein-coupled receptor-likeT: Arm, ARM_PUBF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
E [auth D]1.20.58.530 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase Chain G, domain 1CATH (utative)
A1.20.58.530 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase Chain G, domain 1CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
E [auth D]
PF00612IQ calmodulin-binding motif (IQ)IQ calmodulin-binding motif- Motif
A,
E [auth D]
PF00063Myosin head (motor domain) (Myosin_head)Myosin head (motor domain)Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth B],
H [auth E]
Myosin light chain 6B
C [auth H],
G [auth I],
J
Phalloidin---
B [auth C],
F,
I [auth G]
Actin, alpha skeletal muscle
A,
E [auth D]
Unconventional myosin-Va

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
C [auth H],
G [auth I],
J
DTH RESIDAA0199

PSI-MOD :  D-allo-threonine MOD:00863
C [auth H],
G [auth I],
J
EEP RESIDAA0199

C [auth H],
G [auth I],
J
HYP Parent Component: PRO

RESIDAA0199 , AA0030

PSI-MOD :  D-allo-threonine MOD:00863 , 4-hydroxy-L-proline MOD:00039
B [auth C],
F,
I [auth G]
HIC Parent Component: HIS

RESIDAA0199 , AA0030 , AA0317

PSI-MOD :  D-allo-threonine MOD:00863 , 4-hydroxy-L-proline MOD:00039 , 1'-methyl-L-histidine MOD:00322