7PA6 | pdb_00007pa6

JC polyomavirus VP1 in complex with scFv 27C11

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
T [auth JJJ]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
S [auth III]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
R [auth HHH]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
Q [auth GGG]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
P [auth FFF]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
O [auth EEE]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
N [auth DDD]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
M [auth CCC]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
L [auth BBB]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
K [auth AAA]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T [auth JJJ]	C8	e7pa6JJJ1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
S [auth III]	C8	e7pa6III1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
R [auth HHH]	C8	e7pa6HHH1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
Q [auth GGG]	C8	e7pa6GGG1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
P [auth FFF]	C8	e7pa6FFF1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
O [auth EEE]	C8	e7pa6EEE1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
N [auth DDD]	C8	e7pa6DDD1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
M [auth CCC]	C8	e7pa6CCC1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
L [auth BBB]	C8	e7pa6BBB1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
K [auth AAA]	C8	e7pa6AAA1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
J [auth TTT]	C8	e7pa6TTT1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
I [auth SSS]	C8	e7pa6SSS1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
H [auth RRR]	C8	e7pa6RRR1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
G [auth QQQ]	C8	e7pa6QQQ1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
F [auth PPP]	C8	e7pa6PPP1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
E [auth OOO]	C8	e7pa6OOO1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
D [auth NNN]	C8	e7pa6NNN1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
C [auth MMM]	C8	e7pa6MMM1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
B [auth LLL]	C8	e7pa6LLL1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)
A [auth KKK]	C8	e7pa6KKK1	A: alpha arrays	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: C8	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	PF00718	Polyomavirus coat protein (Polyoma_coat)	Polyomavirus coat protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	Major capsid protein VP1	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A [auth KKK], B [auth LLL], C [auth MMM], D [auth NNN], E [auth OOO], A [auth KKK], B [auth LLL], C [auth MMM], D [auth NNN], E [auth OOO], F [auth PPP], G [auth QQQ], H [auth RRR], I [auth SSS], J [auth TTT]	scFv 27C11 antibody heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	IPR000662	Capsid protein VP1,Polyomavirus	Family
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.