7PA6 | pdb_00007pa6

JC polyomavirus VP1 in complex with scFv 27C11

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
T [auth JJJ]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
S [auth III]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
R [auth HHH]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
Q [auth GGG]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
P [auth FFF]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
O [auth EEE]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
N [auth DDD]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
M [auth CCC]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
L [auth BBB]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)
K [auth AAA]	SCOP2B Superfamily	Group I dsDNA viruses	8081603	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
T [auth JJJ]	Polyoma_coat	e7pa6JJJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
S [auth III]	Polyoma_coat	e7pa6III1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
R [auth HHH]	Polyoma_coat	e7pa6HHH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
Q [auth GGG]	Polyoma_coat	e7pa6GGG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
P [auth FFF]	Polyoma_coat	e7pa6FFF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
O [auth EEE]	Polyoma_coat	e7pa6EEE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
N [auth DDD]	Polyoma_coat	e7pa6DDD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
M [auth CCC]	Polyoma_coat	e7pa6CCC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
L [auth BBB]	Polyoma_coat	e7pa6BBB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
K [auth AAA]	Polyoma_coat	e7pa6AAA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
J [auth TTT]	V-set_8	e7pa6TTT2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
J [auth TTT]	V-set	e7pa6TTT1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
I [auth SSS]	V-set_8	e7pa6SSS2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
I [auth SSS]	V-set	e7pa6SSS1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
H [auth RRR]	V-set_8	e7pa6RRR2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
H [auth RRR]	V-set	e7pa6RRR1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
G [auth QQQ]	V-set_8	e7pa6QQQ1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
G [auth QQQ]	V-set	e7pa6QQQ2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
F [auth PPP]	V-set_8	e7pa6PPP2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
F [auth PPP]	V-set	e7pa6PPP1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
E [auth OOO]	V-set_8	e7pa6OOO1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
E [auth OOO]	V-set	e7pa6OOO2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
D [auth NNN]	V-set_8	e7pa6NNN2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
D [auth NNN]	V-set	e7pa6NNN1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
C [auth MMM]	V-set_8	e7pa6MMM2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
C [auth MMM]	V-set	e7pa6MMM1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
B [auth LLL]	V-set_8	e7pa6LLL2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
B [auth LLL]	V-set	e7pa6LLL1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)
A [auth KKK]	V-set_8	e7pa6KKK2	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set_8	ECOD (1.6)
A [auth KKK]	V-set	e7pa6KKK1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	PF00718	Polyomavirus coat protein (Polyoma_coat)	Polyomavirus coat protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	Major capsid protein VP1	structural molecule activity	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
A [auth KKK], B [auth LLL], C [auth MMM], D [auth NNN], E [auth OOO], A [auth KKK], B [auth LLL], C [auth MMM], D [auth NNN], E [auth OOO], F [auth PPP], G [auth QQQ], H [auth RRR], I [auth SSS], J [auth TTT]	scFv 27C11 antibody heavy chain	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	IPR000662	Capsid protein VP1,Polyomavirus	Family
K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], K [auth AAA], L [auth BBB], M [auth CCC], N [auth DDD], O [auth EEE], P [auth FFF], Q [auth GGG], R [auth HHH], S [auth III], T [auth JJJ]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily