7OJS | pdb_00007ojs

Complex structure 2 of the Bacillus subtilis CdaA c-di-AMP cyclase domain (CdaACD) and the phosphoglucomutase GlmM short variant (GlmMF369)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
C [auth H]	SCOP2B Superfamily	DacA-like	8094673	3001724	SCOP2B (2022-06-29)
D [auth I]	SCOP2B Superfamily	DacA-like	8094673	3001724	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	DacA-like	8094673	3001724	SCOP2B (2022-06-29)
H [auth E]	SCOP2B Superfamily	DacA-like	8094673	3001724	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	DacA-like	8094673	3001724	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	DacA-like	8094673	3001724	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth C]	V-set	e7ojsC1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
B [auth F]	V-set	e7ojsF1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
E [auth A]	V-set	e7ojsA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
F [auth B]	V-set	e7ojsB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
I [auth G]	V-set	e7ojsG1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
J	V-set	e7ojsJ1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
C [auth H]	V-set	e7ojsH1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
D [auth I]	V-set	e7ojsI1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
G [auth D]	V-set	e7ojsD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
H [auth E]	V-set	e7ojsE1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
K	V-set	e7ojsK1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)
L	V-set	e7ojsL1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: V-set	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I (PGM_PMM_I)	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I		Domain
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II (PGM_PMM_II)	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II		Domain
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III (PGM_PMM_III)	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III		Domain
C [auth H], D [auth I], G [auth D], H [auth E], K, C [auth H], D [auth I], G [auth D], H [auth E], K, L	PF02457	DisA bacterial checkpoint controller nucleotide-binding (DAC)	DisA bacterial checkpoint controller nucleotide-binding	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	Phosphoglucosamine mutase	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding isomerase activity phosphoglucosamine mutase activity intramolecular phosphotransferase activity catalytic activity intramolecular transferase activity phosphomannomutase activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process amino sugar biosynthetic process nucleotide-sugar metabolic process carbohydrate derivative metabolic process nucleobase-containing compound biosynthetic process UDP-N-acetylglucosamine biosynthetic process nucleobase-containing compound metabolic process biosynthetic process organophosphate metabolic process carbohydrate metabolic process primary metabolic process metabolic process cellular process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process amino sugar biosynthetic process nucleotide-sugar metabolic process carbohydrate derivative metabolic process nucleobase-containing compound biosynthetic process UDP-N-acetylglucosamine biosynthetic process nucleobase-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process amino sugar metabolic process small molecule metabolic process nucleotide-sugar biosynthetic process phosphorus metabolic process UDP-N-acetylglucosamine metabolic process peptidoglycan-based cell wall biogenesis cell wall organization or biogenesis glycosaminoglycan metabolic process macromolecule biosynthetic process cellular component biogenesis peptidoglycan biosynthetic process cell wall biogenesis cell wall macromolecule biosynthetic process aminoglycan metabolic process peptidoglycan metabolic process aminoglycan biosynthetic process glycosaminoglycan biosynthetic process cellular component organization or biogenesis macromolecule metabolic process cell wall macromolecule metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
C [auth H], D [auth I], G [auth D], H [auth E], K, C [auth H], D [auth I], G [auth D], H [auth E], K, L	Cyclic di-AMP synthase CdaA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding diadenylate cyclase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups phosphorus-oxygen lyase activity cyclase activity lyase activity adenylate cyclase activity	ribose phosphate metabolic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process cAMP biosynthetic process cyclic nucleotide metabolic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process cyclic nucleotide biosynthetic process phosphate-containing compound metabolic process ribose phosphate metabolic process nucleotide biosynthetic process carbohydrate derivative metabolic process purine ribonucleotide biosynthetic process cAMP biosynthetic process cyclic nucleotide metabolic process nucleobase-containing compound metabolic process ribonucleotide biosynthetic process purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process cyclic nucleotide biosynthetic process phosphate-containing compound metabolic process small molecule metabolic process phosphorus metabolic process ribose phosphate biosynthetic process nucleoside phosphate metabolic process carbohydrate derivative biosynthetic process cAMP metabolic process cyclic purine nucleotide metabolic process primary metabolic process nucleotide metabolic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleoside phosphate biosynthetic process metabolic process cellular process purine ribonucleotide metabolic process purine nucleotide biosynthetic process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR005843	Alpha-D-phosphohexomutase, C-terminal	Domain
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR006352	Phosphoglucosamine mutase, bacterial type	Family
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR005846	Alpha-D-phosphohexomutase, alpha/beta/alpha domain III	Domain
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR005845	Alpha-D-phosphohexomutase, alpha/beta/alpha domain II	Domain
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR050060	Phosphoglucosamine mutase	Family
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR016055	Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III	Homologous Superfamily
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR016066	Alpha-D-phosphohexomutase, conserved site	Conserved Site
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR005844	Alpha-D-phosphohexomutase, alpha/beta/alpha domain I	Domain
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR005841	Alpha-D-phosphohexomutase superfamily	Family
A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], A [auth C], B [auth F], E [auth A], F [auth B], I [auth G], J	IPR036900	Alpha-D-phosphohexomutase, C-terminal domain superfamily	Homologous Superfamily
C [auth H], D [auth I], G [auth D], H [auth E], K, C [auth H], D [auth I], G [auth D], H [auth E], K, L	IPR045585	Diadenylate cyclase CdaA, N-terminal domain	Domain
C [auth H], D [auth I], G [auth D], H [auth E], K, C [auth H], D [auth I], G [auth D], H [auth E], K, L	IPR050338	DNA integrity scanning protein DisA	Family
C [auth H], D [auth I], G [auth D], H [auth E], K, C [auth H], D [auth I], G [auth D], H [auth E], K, L	IPR036888	DNA integrity scanning protein, DisA, N-terminal domain superfamily	Homologous Superfamily
C [auth H], D [auth I], G [auth D], H [auth E], K, C [auth H], D [auth I], G [auth D], H [auth E], K, L	IPR014046	Diadenylate cyclase	Family
C [auth H], D [auth I], G [auth D], H [auth E], K, C [auth H], D [auth I], G [auth D], H [auth E], K, L	IPR003390	DNA integrity scanning protein, DisA, N-terminal	Domain
C [auth H], D [auth I], G [auth D], H [auth E], K, C [auth H], D [auth I], G [auth D], H [auth E], K, L	IPR034701	Diadenylate cyclase CdaA	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.