7M8L | pdb_00007m8l

EBOV GP bound to rEBOV-442 and rEBOV-515 Fabs


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
RSecretin_Ne7m8lR1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
L [auth Q]Secretin_Ne7m8lQ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
F [auth P]Secretin_Ne7m8lP1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
Q [auth O]Secretin_Ne7m8lO1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
K [auth N]Secretin_Ne7m8lN1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
E [auth M]Secretin_Ne7m8lM1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
P [auth F]Secretin_Ne7m8lF1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
J [auth E]Secretin_Ne7m8lE1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
DSecretin_Ne7m8lD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
O [auth L]Secretin_Ne7m8lL1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
I [auth K]Secretin_Ne7m8lK1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
C [auth J]Secretin_Ne7m8lJ1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
N [auth I]Secretin_Ne7m8lI1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
HSecretin_Ne7m8lH1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
B [auth G]Secretin_Ne7m8lG1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
M [auth C]Secretin_Ne7m8lC1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
G [auth B]Secretin_Ne7m8lB1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)
ASecretin_Ne7m8lA1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Secretin_NECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
F [auth P],
L [auth Q],
R
Light ChainIGKV3 Kappavirion spike glycoprotein 2SAbDab (2026-04-17)
E [auth M],
K [auth N],
Q [auth O]
Heavy ChainIGHV4 -virion spike glycoprotein 2SAbDab (2026-04-17)
C [auth J],
I [auth K],
O [auth L]
Light ChainIGKV3 Kappavirion spike glycoprotein 1SAbDab (2026-04-17)
B [auth G],
H,
N [auth I]
Heavy ChainIGHV3 -virion spike glycoprotein 1SAbDab (2026-04-17)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D,
J [auth E],
P [auth F]
PF22307Envelope glycoprotein GP2-like, HR1-HR2 (Ebola-like_HR1-HR2)Envelope glycoprotein GP2-like, HR1-HR2This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel ...This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel orientation). This domain may have been acquired via horizontal transfer from retroviruses.
Domain
A,
G [auth B],
M [auth C]
PF01611Filovirus glycoprotein (Filo_glycop)Filovirus glycoprotein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth P],
L [auth Q],
R
rEBOV-515 Fab light chain---
E [auth M],
K [auth N],
Q [auth O]
rEBOV-515 Fab heavy chain---
D,
J [auth E],
P [auth F]
Virion spike glycoprotein 2
C [auth J],
I [auth K],
O [auth L]
rEBOV-442 Fab light chain---
B [auth G],
H,
N [auth I]
rEBOV-442 Fab heavy chain---
A,
G [auth B],
M [auth C]
Virion spike glycoprotein 1