7M8L | pdb_00007m8l

EBOV GP bound to rEBOV-442 and rEBOV-515 Fabs


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
F [auth P]V-sete7m8lP1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
RV-sete7m8lR1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
L [auth Q]V-sete7m8lQ1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
E [auth M]V-set_8e7m8lM1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
K [auth N]V-set_8e7m8lN1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
Q [auth O]V-set_8e7m8lO1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
J [auth E]Ebola-like_HR1-HR2e7m8lE1 A: a+b duplicates or obligate multimersX: Envelope glycoprotein GP2-related (From Topology)H: Envelope glycoprotein GP2-related (From Topology)T: Envelope glycoprotein GP2-relatedF: Ebola-like_HR1-HR2ECOD (1.6)
P [auth F]Ebola-like_HR1-HR2e7m8lF1 A: a+b duplicates or obligate multimersX: Envelope glycoprotein GP2-related (From Topology)H: Envelope glycoprotein GP2-related (From Topology)T: Envelope glycoprotein GP2-relatedF: Ebola-like_HR1-HR2ECOD (1.6)
DEbola-like_HR1-HR2e7m8lD1 A: a+b duplicates or obligate multimersX: Envelope glycoprotein GP2-related (From Topology)H: Envelope glycoprotein GP2-related (From Topology)T: Envelope glycoprotein GP2-relatedF: Ebola-like_HR1-HR2ECOD (1.6)
C [auth J]V-sete7m8lJ1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
I [auth K]V-sete7m8lK1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
O [auth L]V-sete7m8lL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-setECOD (1.6)
B [auth G]V-set_8e7m8lG1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
N [auth I]V-set_8e7m8lI1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
HV-set_8e7m8lH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_8ECOD (1.6)
G [auth B]Filo_glycope7m8lB1 A: a+b complex topologyX: Envelope glycoprotein GP1 (From Topology)H: Envelope glycoprotein GP1 (From Topology)T: Envelope glycoprotein GP1F: Filo_glycopECOD (1.6)
M [auth C]Filo_glycope7m8lC1 A: a+b complex topologyX: Envelope glycoprotein GP1 (From Topology)H: Envelope glycoprotein GP1 (From Topology)T: Envelope glycoprotein GP1F: Filo_glycopECOD (1.6)
AFilo_glycope7m8lA1 A: a+b complex topologyX: Envelope glycoprotein GP1 (From Topology)H: Envelope glycoprotein GP1 (From Topology)T: Envelope glycoprotein GP1F: Filo_glycopECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
F [auth P],
L [auth Q],
R
Light ChainIGKV3 Kappavirion spike glycoprotein 2SAbDab (2025-12-19)
E [auth M],
K [auth N],
Q [auth O]
Heavy ChainIGHV4 -virion spike glycoprotein 2SAbDab (2025-12-19)
C [auth J],
I [auth K],
O [auth L]
Light ChainIGKV3 Kappavirion spike glycoprotein 1SAbDab (2025-12-19)
B [auth G],
H,
N [auth I]
Heavy ChainIGHV3 -virion spike glycoprotein 1SAbDab (2025-12-19)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D,
J [auth E],
P [auth F]
PF22307Envelope glycoprotein GP2-like, HR1-HR2 (Ebola-like_HR1-HR2)Envelope glycoprotein GP2-like, HR1-HR2This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel ...This entry spans heptad repeats 1 and 2 of the glycoprotein (GP) from Ebola and Marburg viruses [1-5]. Viral infection involves the formation of a trimer-of-hairpins structure (three HR1s helices, buttressed by three HR2 helices lying in antiparallel orientation). This domain may have been acquired via horizontal transfer from retroviruses.
Domain
A,
G [auth B],
M [auth C]
PF01611Filovirus glycoprotein (Filo_glycop)Filovirus glycoprotein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
F [auth P],
L [auth Q],
R
rEBOV-515 Fab light chain---
E [auth M],
K [auth N],
Q [auth O]
rEBOV-515 Fab heavy chain---
D,
J [auth E],
P [auth F]
Virion spike glycoprotein 2
C [auth J],
I [auth K],
O [auth L]
rEBOV-442 Fab light chain---
B [auth G],
H,
N [auth I]
rEBOV-442 Fab heavy chain---
A,
G [auth B],
M [auth C]
Virion spike glycoprotein 1