7M3T | pdb_00007m3t

Crystallographic structure of a cubic crystal of STMV (80.7 degree rotation about 111) grown from chloride

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
N	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
FA [auth KK]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
EA [auth JJ]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
DA [auth II]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
CA [auth HH]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
BA [auth GG]	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Satellite viruses	8040781	3000942	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N	ubiquitin	e7m3tN1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
G	ubiquitin	e7m3tG1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
O	ubiquitin	e7m3tO1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
M	ubiquitin	e7m3tM1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
L	ubiquitin	e7m3tL1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
K	ubiquitin	e7m3tK1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
J	ubiquitin	e7m3tJ1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
I	ubiquitin	e7m3tI1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
H	ubiquitin	e7m3tH1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
FA [auth KK]	ubiquitin	e7m3tKK1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
F	ubiquitin	e7m3tF1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
EA [auth JJ]	ubiquitin	e7m3tJJ1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
E	ubiquitin	e7m3tE1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
DA [auth II]	ubiquitin	e7m3tII1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
D	ubiquitin	e7m3tD1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
CA [auth HH]	ubiquitin	e7m3tHH1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
C	ubiquitin	e7m3tC1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
BA [auth GG]	ubiquitin	e7m3tGG1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
B	ubiquitin	e7m3tB1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)
A	ubiquitin	e7m3tA1	A: a/b three-layered sandwiches	X: RNase A-like	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: ubiquitin	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth n], MA [auth qq]	RNA (5'-R(PUPUPUPUPUPUPUPU)-3')	-	-	-
KA [auth kk], Z [auth m]	RNA (5'-R(PUPUPUPUPUPUPUPUPUPU)-3')	-	-	-
LA [auth ll], Y [auth i]	RNA (5'-R(PUPUPUPUPUPUPUPUPUPUP*U)-3')	-	-	-
X [auth h]	RNA (5'-R(PUPAPUPUPUPUPUPUPUPUPUPU)-3')	-	-	-
IA [auth WW], W [auth e]	RNA (5'-R(PUPUPUPUPUPUPUPUPUPUPUPU)-3')	-	-	-
GA [auth TT], HA [auth UU], P, Q [auth S], R [auth T], GA [auth TT], HA [auth UU], P, Q [auth S], R [auth T], S [auth V], T [auth X], U [auth Y], V [auth a]	RNA (5'-R(PAPAPAPAPAPAPAPAPAPA)-3')	-	-	-
N	Coat protein	structural molecule activity	-	viral capsid virion component
G	Coat protein	structural molecule activity	-	viral capsid virion component
JA [auth bb]	RNA (5'-R(PAPAPAPAPAPAPAPAPAPAPAPA)-3')	-	-	-
A, B, BA [auth GG], C, CA [auth HH], A, B, BA [auth GG], C, CA [auth HH], D, DA [auth II], E, EA [auth JJ], F, FA [auth KK], H, I, J, K, L, M, O	Coat protein	structural molecule activity	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
N	IPR037164	Satellite virus coat domain superfamily	Homologous Superfamily
G	IPR037164	Satellite virus coat domain superfamily	Homologous Superfamily
A, B, BA [auth GG], C, CA [auth HH], A, B, BA [auth GG], C, CA [auth HH], D, DA [auth II], E, EA [auth JJ], F, FA [auth KK], H, I, J, K, L, M, O	IPR037164	Satellite virus coat domain superfamily	Homologous Superfamily