7KZO

Outer dynein arm docking complex bound to doublet microtubules from C. reinhardtii


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth A1]PF03953e7kzoA11 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
A [auth A1]PF00091e7kzoA12 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
C [auth A3]PF03953e7kzoA32 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
C [auth A3]PF00091e7kzoA31 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
E [auth A5]PF03953e7kzoA51 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
E [auth A5]PF00091e7kzoA52 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
G [auth A7]PF03953e7kzoA71 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
G [auth A7]PF00091e7kzoA72 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
H [auth B1]PF03953e7kzoB11 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
H [auth B1]PF00091e7kzoB12 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
J [auth B3]PF03953e7kzoB32 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
J [auth B3]PF00091e7kzoB31 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
L [auth B5]PF03953e7kzoB51 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
L [auth B5]PF00091e7kzoB52 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
N [auth B7]PF03953e7kzoB71 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
N [auth B7]PF00091e7kzoB72 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
B [auth A2]PF03953e7kzoA21 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
B [auth A2]PF00091e7kzoA22 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
D [auth A4]PF03953e7kzoA41 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
D [auth A4]PF00091e7kzoA42 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
F [auth A6]PF03953e7kzoA61 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
F [auth A6]PF00091e7kzoA62 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
I [auth B2]PF03953e7kzoB22 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
I [auth B2]PF00091e7kzoB21 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
K [auth B4]PF03953e7kzoB42 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
K [auth B4]PF00091e7kzoB41 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
M [auth B6]PF03953e7kzoB61 A: a+b three layersX: Bacillus chorismate mutase-likeH: Tubulin C-terminal domain-like (From Topology)T: Tubulin C-terminal domain-likeF: PF03953ECOD (1.6)
M [auth B6]PF00091e7kzoB62 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: Tubulin nucleotide-binding domain-likeF: PF00091ECOD (1.6)
R [auth X1]F_UNCLASSIFIEDe7kzoX11 A: alpha bundlesX: YscO-likeH: CT398 helical hairpin (From Topology)T: CT398 helical hairpinF: F_UNCLASSIFIEDECOD (1.6)
S [auth Y1]PF21773e7kzoY11 A: alpha bundlesX: YscO-likeH: CT398 helical hairpin (From Topology)T: CT398 helical hairpinF: PF21773ECOD (1.6)
T [auth Z]F_UNCLASSIFIEDe7kzoZ2 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: F_UNCLASSIFIEDECOD (1.6)
T [auth Z]PF13499e7kzoZ1 A: alpha arraysX: EF-handH: EF-hand-relatedT: EF-handF: PF13499ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain
PF00091Tubulin/FtsZ family, GTPase domain (Tubulin)Tubulin/FtsZ family, GTPase domainThis family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ...This family includes the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. Members of this family are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules.
Domain
PF03953Tubulin C-terminal domain (Tubulin_C)Tubulin C-terminal domainThis family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tub ...This family includes the tubulin alpha, beta and gamma chains. Members of this family are involved in polymer formation. Tubulins are GTPases. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea. Tubulin is the major component of microtubules. (The FtsZ GTPases have been split into their won family).
Domain
O [auth C]PF08385Dynein heavy chain, N-terminal region 1 (DHC_N1)Dynein heavy chain, N-terminal region 1- Family
Q [auth Y],
S [auth Y1]
PF21773ODAD1 central coiled coil region (ODAD1_CC)ODAD1 central coiled coil regionThis domain, previously know as DUF6872, is found in Outer dynein arm-docking complex subunit 1 (ODAD1, CCDC114) from humans and similar eukaryotic proteins. In mammals, CCDC114 forms a hetero-coiled coil with ODAD1/CCDC151 within the A07/A08 interpr ...This domain, previously know as DUF6872, is found in Outer dynein arm-docking complex subunit 1 (ODAD1, CCDC114) from humans and similar eukaryotic proteins. In mammals, CCDC114 forms a hetero-coiled coil with ODAD1/CCDC151 within the A07/A08 interprotofilament cleft, analogous to the DC1/2 coiled coil of the trimeric ODA-DC observed in C. reinhardtii axoneme [1,2]. DC2 is a homolog of the human ODAD1/CCDC151 and in C.reinhardtii it is a part of the ODA-DC that consists of three proteins: DC1, DC2, and DC3. The N-terminal halves of DC1 and DC2 form a microtubule-bound heteromeric coiled-coil [1,3].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Tubulin beta
Tubulin alpha
O [auth C]Dynein gamma chain, flagellar outer arm
P [auth X],
R [auth X1]
Outer dynein arm-docking complex subunit 1- - -
Q [auth Y],
S [auth Y1]
Outer dynein arm protein 1-
T [auth Z]Outer dynein arm-docking complex protein DC3 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR003008Tubulin/FtsZ, GTPase domainDomain
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
IPR017975Tubulin, conserved siteConserved Site
IPR000217TubulinFamily
IPR023123Tubulin, C-terminalHomologous Superfamily
IPR002453Beta tubulinFamily
IPR013838Beta tubulin, autoregulation binding siteBinding Site
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
IPR003008Tubulin/FtsZ, GTPase domainDomain
IPR008280Tubulin/FtsZ, C-terminalHomologous Superfamily
IPR037103Tubulin/FtsZ-like, C-terminal domainHomologous Superfamily
IPR017975Tubulin, conserved siteConserved Site
IPR002452Alpha tubulinFamily
IPR000217TubulinFamily
IPR023123Tubulin, C-terminalHomologous Superfamily
IPR018316Tubulin/FtsZ, 2-layer sandwich domainDomain
IPR036525Tubulin/FtsZ, GTPase domain superfamilyHomologous Superfamily
O [auth C]IPR026983Dynein heavy chainFamily
O [auth C]IPR013602Dynein heavy chain, linkerDomain
O [auth C]IPR035706Dynein heavy chain, ATP-binding dynein motor regionDomain
O [auth C]IPR041228Dynein heavy chain, C-terminal domainDomain
O [auth C]IPR003593AAA+ ATPase domainDomain
O [auth C]IPR041466Dynein heavy chain, AAA 5 extension domainDomain
O [auth C]IPR041658Dynein heavy chain AAA lid domainDomain
O [auth C]IPR041589Dynein heavy chain 3, AAA+ lid domainDomain
O [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
O [auth C]IPR042228Dynein heavy chain, linker, subdomain 3Homologous Superfamily
O [auth C]IPR035699Dynein heavy chain, hydrolytic ATP-binding dynein motor regionDomain
O [auth C]IPR042219Dynein heavy chain AAA lid domain superfamilyHomologous Superfamily
O [auth C]IPR024743Dynein heavy chain, coiled coil stalkDomain
O [auth C]IPR013594Dynein heavy chain, tailDomain
O [auth C]IPR043157Dynein heavy chain, AAA1 domain, small subdomainHomologous Superfamily
O [auth C]IPR042222Dynein heavy chain, domain 2, N-terminalHomologous Superfamily
O [auth C]IPR043160Dynein heavy chain, C-terminal domain, barrel regionHomologous Superfamily
O [auth C]IPR004273Dynein heavy chain region D6 P-loop domainDomain
O [auth C]IPR024317Dynein heavy chain, AAA module D4Domain
Q [auth Y],
S [auth Y1]
IPR049258ODAD1, central coiled coil regionDomain
T [auth Z]IPR018247EF-Hand 1, calcium-binding siteBinding Site
T [auth Z]IPR002048EF-hand domainDomain
T [auth Z]IPR011992EF-hand domain pairHomologous Superfamily