7KZO | pdb_00007kzo

Outer dynein arm docking complex bound to doublet microtubules from C. reinhardtii

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth A1]	Peptidase_C15	e7kzoA11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
C [auth A3]	Peptidase_C15	e7kzoA31	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
E [auth A5]	Peptidase_C15	e7kzoA51	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
G [auth A7]	Peptidase_C15	e7kzoA71	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
H [auth B1]	Peptidase_C15	e7kzoB11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
J [auth B3]	Peptidase_C15	e7kzoB31	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
L [auth B5]	Peptidase_C15	e7kzoB51	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
N [auth B7]	Peptidase_C15	e7kzoB71	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
B [auth A2]	Peptidase_C15	e7kzoA21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
D [auth A4]	Peptidase_C15	e7kzoA41	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
F [auth A6]	Peptidase_C15	e7kzoA61	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
I [auth B2]	Peptidase_C15	e7kzoB21	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
K [auth B4]	Peptidase_C15	e7kzoB41	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
M [auth B6]	Peptidase_C15	e7kzoB61	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
R [auth X1]	Peptidase_C15	e7kzoX11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
Q [auth Y]	AAA_lid_RFC1	e7kzoY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
S [auth Y1]	Peptidase_C15	e7kzoY11	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)
T [auth Z]	Peptidase_C15	e7kzoZ1	A: alpha arrays	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Peptidase_C15	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	Tubulin beta	structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding structural constituent of cytoskeleton structural molecule activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	microtubule-based process cellular process	polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	Tubulin alpha	structural constituent of cytoskeleton structural molecule activity hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding structural constituent of cytoskeleton structural molecule activity hydrolase activity catalytic activity binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cation binding metal ion binding	microtubule-based process cellular process	polymeric cytoskeletal fiber intracellular anatomical structure intracellular membraneless organelle intracellular organelle cellular anatomical structure cytoskeleton organelle membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton
O [auth C]	Dynein gamma chain, flagellar outer arm	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding dynein light intermediate chain binding protein binding microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity cytoskeletal motor activity minus-end-directed microtubule motor activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity dynein intermediate chain binding	cilium-dependent cell motility cellular process microtubule-based movement microtubule-based process cilium movement involved in cell motility cilium movement cell motility cilium or flagellum-dependent cell motility organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization cilium-dependent cell motility cellular process microtubule-based movement microtubule-based process cilium movement involved in cell motility cilium movement cell motility cilium or flagellum-dependent cell motility organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly outer dynein arm assembly protein-containing complex assembly cilium assembly cellular component organization or biogenesis axoneme assembly cytoskeleton organization cilium organization cell projection assembly	membrane-bounded organelle cell projection cellular anatomical structure organelle cilium motile cilium plasma membrane bounded cell projection protein-containing complex intracellular anatomical structure catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cytoskeleton membrane-bounded organelle cell projection cellular anatomical structure organelle cilium motile cilium plasma membrane bounded cell projection protein-containing complex intracellular anatomical structure catalytic complex dynein complex intracellular membraneless organelle intracellular organelle cytoskeleton membraneless organelle microtubule associated complex microtubule cytoskeleton polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex
P [auth X], R [auth X1]	Outer dynein arm-docking complex subunit 1	-	-	-
Q [auth Y], S [auth Y1]	Outer dynein arm protein 1	-	organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly outer dynein arm assembly protein-containing complex assembly cilium assembly organelle assembly plasma membrane bounded cell projection organization axonemal dynein complex assembly protein-containing complex organization cell projection organization microtubule cytoskeleton organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis microtubule bundle formation organelle organization cellular component assembly outer dynein arm assembly protein-containing complex assembly cilium assembly cellular process microtubule-based process cellular component organization or biogenesis axoneme assembly cytoskeleton organization cilium organization cell projection assembly cilium-dependent cell motility microtubule-based movement cilium movement involved in cell motility cilium movement cell motility cilium or flagellum-dependent cell motility	membrane-bounded organelle protein-containing complex outer dynein arm intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection membrane-bounded organelle protein-containing complex outer dynein arm intracellular anatomical structure catalytic complex axoneme ciliary plasm axonemal dynein complex dynein complex intracellular membraneless organelle cilium plasma membrane bounded cell projection intracellular organelle cell projection cellular anatomical structure cytoskeleton organelle membraneless organelle microtubule associated complex cytoplasm microtubule cytoskeleton
T [auth Z]	Outer dynein arm-docking complex protein DC3	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding	-	cellular anatomical structure organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR017975	Tubulin, conserved site	Conserved Site
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR000217	Tubulin	Family
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR002453	Beta tubulin	Family
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR013838	Beta tubulin, autoregulation binding site	Binding Site
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], A [auth A1], C [auth A3], E [auth A5], G [auth A7], H [auth B1], J [auth B3], L [auth B5], N [auth B7]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	IPR003008	Tubulin/FtsZ, GTPase domain	Domain
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	IPR008280	Tubulin/FtsZ, C-terminal	Homologous Superfamily
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	IPR037103	Tubulin/FtsZ-like, C-terminal domain	Homologous Superfamily
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	IPR017975	Tubulin, conserved site	Conserved Site
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	IPR002452	Alpha tubulin	Family
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	IPR000217	Tubulin	Family
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	IPR023123	Tubulin, C-terminal	Homologous Superfamily
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	IPR018316	Tubulin/FtsZ, 2-layer sandwich domain	Domain
B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], B [auth A2], D [auth A4], F [auth A6], I [auth B2], K [auth B4], M [auth B6]	IPR036525	Tubulin/FtsZ, GTPase domain superfamily	Homologous Superfamily
O [auth C]	IPR026983	Dynein heavy chain	Family
O [auth C]	IPR013602	Dynein heavy chain, linker	Domain
O [auth C]	IPR042219	Dynein heavy chain, AAA lid domain superfamily	Homologous Superfamily
O [auth C]	IPR035706	Dynein heavy chain, ATP-binding dynein motor region	Domain
O [auth C]	IPR041228	Dynein heavy chain, C-terminal domain	Domain
O [auth C]	IPR003593	AAA+ ATPase domain	Domain
O [auth C]	IPR041658	Dynein heavy chain, AAA lid domain	Domain
O [auth C]	IPR056759	Dynein axonemal heavy chain 2/5/8, coiled-coil domain	Domain
O [auth C]	IPR041466	Dynein heavy chain, AAA 5 extension domain	Domain
O [auth C]	IPR041589	Dynein heavy chain 3, AAA+ lid domain	Domain
O [auth C]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
O [auth C]	IPR042228	Dynein heavy chain, linker, subdomain 3	Homologous Superfamily
O [auth C]	IPR035699	Dynein heavy chain, hydrolytic ATP-binding dynein motor region	Domain
O [auth C]	IPR024743	Dynein heavy chain, coiled coil stalk	Domain
O [auth C]	IPR013594	Dynein heavy chain, tail	Domain
O [auth C]	IPR043157	Dynein heavy chain, AAA1 domain, small subdomain	Homologous Superfamily
O [auth C]	IPR004273	Dynein heavy chain, D6 P-loop domain	Domain
O [auth C]	IPR042222	Dynein heavy chain, domain 2, N-terminal	Homologous Superfamily
O [auth C]	IPR043160	Dynein heavy chain, C-terminal domain, barrel region	Homologous Superfamily
O [auth C]	IPR024317	Dynein heavy chain, AAA module D4	Domain
Q [auth Y], S [auth Y1]	IPR051876	Outer dynein arm-docking/Coiled-coil domain-containing protein	Family
Q [auth Y], S [auth Y1]	IPR049258	ODAD1, central coiled coil region	Domain
T [auth Z]	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
T [auth Z]	IPR002048	EF-hand domain	Domain
T [auth Z]	IPR011992	EF-hand domain pair	Homologous Superfamily
T [auth Z]	IPR050145	Centrin/CML-like	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.