Crystal structure of Ruminococcus gnavus immunoglobulin binding protein in complex with 338E6 Fab
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| E [auth C] | Sybindin | e7kpjC1 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Sybindin | ECOD (v294.2) |
| D [auth A] | Peptidase_M4,Peptidase_M4_C | e7kpjA1 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Peptidase_M4,Peptidase_M4_C | ECOD (v294.2) |
| F [auth D] | Sybindin | e7kpjD1 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Sybindin | ECOD (v294.2) |
| A [auth B] | Peptidase_M4,Peptidase_M4_C | e7kpjB1 | A: beta barrels | X: Nuclear receptor ligand-binding domain | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Peptidase_M4,Peptidase_M4_C | ECOD (v294.2) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| E [auth C] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| D [auth A] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| F [auth D] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
| A [auth B] | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (utative) |
SAbDab Antibody Annotation SAbDab Database Homepage
| Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
|---|---|---|---|---|---|
| D [auth A], E [auth C] | Heavy Chain | IGHV5 | - | gram_pos_anchoring domain-containing protein | SAbDab (2026-05-15) |
| A [auth B], F [auth D] | Light Chain | IGKV6 | Kappa | gram_pos_anchoring domain-containing protein | SAbDab (2026-05-15) |














