7KDV | pdb_00007kdv

Murine core lysosomal multienzyme complex (LMC) composed of acid beta-galactosidase (GLB1) and protective protein cathepsin A (PPCA, CTSA)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2 Family	Serine carboxypeptidase-like	8102686	4000709	SCOP2 (2022-06-29)
L	SCOP2 Superfamily	alpha/beta-Hydrolases	8102687	3000102	SCOP2 (2022-06-29)
J	SCOP2B Superfamily	alpha/beta-Hydrolases	8102687	3000102	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	alpha/beta-Hydrolases	8102687	3000102	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	alpha/beta-Hydrolases	8102687	3000102	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	alpha/beta-Hydrolases	8102687	3000102	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha/beta-Hydrolases	8102687	3000102	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Omp85	e7kdvL1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
J	Omp85	e7kdvJ1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
H	Omp85	e7kdvH1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
F	Omp85	e7kdvF1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
D	Omp85	e7kdvD1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
B	DctP	e7kdvB1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: DctP	ECOD (v294.1)
K	Omp85	e7kdvK1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
I	Omp85	e7kdvI1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
G	Omp85	e7kdvG1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
E	Omp85	e7kdvE1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
C	Omp85	e7kdvC1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: Omp85	ECOD (v294.1)
A	DctP	e7kdvA1	A: a/b three-layered sandwiches	X: CNF1/YfiH-like putative cysteine hydrolases	H: Bromodomain	T: Bromodomain	F: DctP	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, D, F, H, J B, D, F, H, J, L	PF00450	Serine carboxypeptidase (Peptidase_S10)	Serine carboxypeptidase		Domain
A, C, E, G, I A, C, E, G, I, K	PF21317	Beta-galactosidase, first all-beta domain (BetaGal_ABD_1)	Beta-galactosidase, first all-beta domain	Beta-galactosidases belong to glycosyl hydrolase 35 family (GH35) which catalyse the cleaveage of beta-linked terminal galactosyl residues from gangliosides, glycoproteins, and glycosaminoglycans. These proteins consist of a catalytic TIM-barrel and ...	Beta-galactosidases belong to glycosyl hydrolase 35 family (GH35) which catalyse the cleaveage of beta-linked terminal galactosyl residues from gangliosides, glycoproteins, and glycosaminoglycans. These proteins consist of a catalytic TIM-barrel and two all-beta domains (ABD1 and ABD2) [1-5]. This entry represents the first all-beta domain ABD1. ABD2 is represented in Pfam:PF13364.	Domain
A, C, E, G, I A, C, E, G, I, K	PF01301	Glycosyl hydrolases family 35 (Glyco_hydro_35)	Glycosyl hydrolases family 35		Domain
A, C, E, G, I A, C, E, G, I, K	PF21467	Beta-galactosidase, galactose-binding domain (BetaGal_gal-bd)	Beta-galactosidase, galactose-binding domain	Beta-galactosidase belongs to Glycoside hydrolase family 35 [1-5]. This entry represents the galactose-binding domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, D, F, H, J B, D, F, H, J, L	Lysosomal protective protein	serine-type exopeptidase activity peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type carboxypeptidase activity serine-type peptidase activity hydrolase activity exopeptidase activity catalytic activity carboxypeptidase activity	regulation of protein stability biological regulation regulation of biological quality proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process regulation of cellular process autophagy negative regulation of biological process regulation of autophagy regulation of protein stability biological regulation regulation of biological quality proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process catabolic process regulation of cellular process autophagy negative regulation of biological process regulation of autophagy macromolecule catabolic process negative regulation of protein catabolic process regulation of primary metabolic process chaperone-mediated autophagy negative regulation of cellular process process utilizing autophagic mechanism negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of catabolic process regulation of biological process negative regulation of metabolic process regulation of protein metabolic process protein catabolic process regulation of catabolic process regulation of macromolecule metabolic process regulation of chaperone-mediated autophagy negative regulation of chaperone-mediated autophagy negative regulation of autophagy regulation of metabolic process regulation of protein catabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle lytic vacuole vacuole lysosome
A, C, E, G, I A, C, E, G, I, K	Beta-galactosidase	hydrolase activity, acting on glycosyl bonds beta-galactosidase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity galactosidase activity galactoside binding binding carbohydrate derivative binding identical protein binding protein binding protein homodimerization activity protein dimerization activity	carbohydrate metabolic process primary metabolic process metabolic process cellular process carbohydrate derivative catabolic process glycoprotein catabolic process catabolic process keratan sulfate proteoglycan metabolic process carbohydrate derivative metabolic process protein catabolic process keratan sulfate proteoglycan catabolic process glycoprotein metabolic process macromolecule catabolic process protein metabolic process carbohydrate metabolic process primary metabolic process metabolic process cellular process carbohydrate derivative catabolic process glycoprotein catabolic process catabolic process keratan sulfate proteoglycan metabolic process carbohydrate derivative metabolic process protein catabolic process keratan sulfate proteoglycan catabolic process glycoprotein metabolic process macromolecule catabolic process protein metabolic process macromolecule metabolic process proteoglycan metabolic process proteoglycan catabolic process response to Thyroglobulin triiodothyronine response to stimulus response to chemical sphingolipid catabolic process ceramide metabolic process ganglioside catabolic process glycosphingolipid catabolic process lipid catabolic process glycolipid metabolic process glycosphingolipid metabolic process liposaccharide metabolic process sphingolipid metabolic process glycolipid catabolic process ceramide catabolic process ganglioside metabolic process lipid metabolic process response to ketone response to lipid response to endogenous stimulus response to alcohol response to glucocorticoid response to oxygen-containing compound response to corticosteroid response to hormone response to steroid hormone response to cortisone monosaccharide metabolic process hexose catabolic process carbohydrate catabolic process galactose catabolic process hexose metabolic process galactose metabolic process small molecule metabolic process monosaccharide catabolic process small molecule catabolic process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle lytic vacuole vacuole intracellular membrane-bounded organelle lysosome Golgi apparatus endomembrane system

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, D, F, H, J B, D, F, H, J, L	IPR001563	Peptidase S10, serine carboxypeptidase	Family
B, D, F, H, J B, D, F, H, J, L	IPR018202	Serine carboxypeptidase, serine active site	Active Site
B, D, F, H, J B, D, F, H, J, L	IPR033124	Serine carboxypeptidases, histidine active site	Active Site
B, D, F, H, J B, D, F, H, J, L	IPR029058	Alpha/Beta hydrolase fold	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR048913	Beta-galactosidase, galactose-binding domain	Domain
A, C, E, G, I A, C, E, G, I, K	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR019801	Glycoside hydrolase, family 35, conserved site	Conserved Site
A, C, E, G, I A, C, E, G, I, K	IPR001944	Glycoside hydrolase, family 35	Family
A, C, E, G, I A, C, E, G, I, K	IPR031330	Glycoside hydrolase 35, catalytic domain	Domain
A, C, E, G, I A, C, E, G, I, K	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, C, E, G, I A, C, E, G, I, K	IPR026283	Beta-galactosidase 1-like	Family
A, C, E, G, I A, C, E, G, I, K	IPR048912	Beta-galactosidase 1-like , first all-beta domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.