7ETJ | pdb_00007etj

C5 portal vertex in the partially-enveloped virion capsid

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R [auth a]	AAA_lid_RFC1	e7etja1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
T [auth C]	AAA_lid_RFC1	e7etjC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
W [auth Z]	AAA_lid_RFC1	e7etjZ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
V [auth Y]	AAA_lid_RFC1	e7etjY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
U [auth D]	AAA_lid_RFC1	e7etjD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
S [auth B]	AAA_lid_RFC1	e7etjB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
K [auth O]	AAA_lid_RFC1	e7etjO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)
J [auth N]	AAA_lid_RFC1	e7etjN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: AAA_lid_RFC1	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], W [auth Z]	Major capsid protein	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
M [auth R], N [auth S], O [auth T], P [auth i], Q [auth j]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle
L [auth 1]	ORFL92C_UL32	-	-	-
J [auth N], K [auth O]	Capsid vertex component 2	-	virion assembly viral process viral life cycle viral genome packaging	viral capsid virion component
I [auth M]	Capsid vertex component 1	-	-	-
G [auth g], H [auth m]	Triplex capsid protein 1	DNA binding binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component
C [auth H], D [auth P]	Large tegument protein deneddylase	cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host ubiquitin-like protein modification symbiont-mediated perturbation of host process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction	virion component
A [auth h], B [auth I], E [auth n], F [auth o]	Triplex capsid protein 2	structural molecule activity	-	viral capsid virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], W [auth Z]	IPR000912	Herpesvirus major capsid protein	Family
R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], W [auth Z]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
M [auth R], N [auth S], O [auth T], P [auth i], Q [auth j]	IPR031385	Small capsid protein, Herpesviridae	Family
J [auth N], K [auth O]	IPR002493	Capsid vertex component 2	Family
G [auth g], H [auth m]	IPR004999	Herpesvirus capsid shell protein 1	Family
C [auth H], D [auth P]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
C [auth H], D [auth P]	IPR006928	Herpesvirus large tegument protein, USP domain	Domain
C [auth H], D [auth P]	IPR034702	Large tegument protein deneddylase	Family
A [auth h], B [auth I], E [auth n], F [auth o]	IPR002690	Herpesvirus capsid protein 2	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.