7ETJ

C5 portal vertex in the partially-enveloped virion capsid

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth h], B [auth I], E [auth n], F [auth o]	PF01802	Herpesvirus VP23 like capsid protein (Herpes_V23)	Herpesvirus VP23 like capsid protein	-	Family
G [auth g], H [auth m]	PF03327	Herpesvirus capsid shell protein VP19C (Herpes_VP19C)	Herpesvirus capsid shell protein VP19C	-	Family
I [auth M]	PF04559	Herpesvirus UL17 protein (Herpes_UL17)	Herpesvirus UL17 protein	-	Family
L [auth 1]	PF06070	Herpesvirus large structural phosphoprotein UL32 (Herpes_UL32)	Herpesvirus large structural phosphoprotein UL32	-	Family
R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], W [auth Z]	PF03122	Herpes virus major capsid protein (Herpes_MCP)	Herpes virus major capsid protein	-	Family
J [auth N], K [auth O]	PF01499	Herpesvirus UL25 family (Herpes_UL25)	Herpesvirus UL25 family	-	Family
M [auth R], N [auth S], O [auth T], P [auth i], Q [auth j]	PF17086	Small capsid protein of Herpesviridae (HV_small_capsid)	Small capsid protein of Herpesviridae	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth h], B [auth I], E [auth n], F [auth o]	Triplex capsid protein 2	structural molecule activity	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
C [auth H], D [auth P]	Large tegument protein deneddylase	cysteine-type peptidase activity ubiquitin-like protein peptidase activity peptidase activity cysteine-type deubiquitinase activity catalytic activity, acting on a protein hydrolase activity catalytic activity deubiquitinase activity	symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host ubiquitin-like protein modification modulation by symbiont of host process cellular process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process symbiont-mediated perturbation of host cellular process biological process involved in interspecies interaction between organisms symbiont-mediated perturbation of host ubiquitin-like protein modification modulation by symbiont of host process cellular process modulation of process of another organism biological process involved in interaction with host biological process involved in symbiotic interaction organic substance metabolic process organonitrogen compound metabolic process proteolysis metabolic process primary metabolic process protein metabolic process macromolecule metabolic process	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle host cell cytoplasm virion component viral tegument
G [auth g], H [auth m]	Triplex capsid protein 1	DNA binding binding organic cyclic compound binding nucleic acid binding	virion assembly viral process viral capsid assembly viral life cycle	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
I [auth M]	Capsid vertex component 1	-	-	-
L [auth 1]	ORFL92C_UL32	-	-	-
R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], W [auth Z]	Major capsid protein	structural molecule activity	-	host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle viral capsid icosahedral viral capsid virion component T=16 icosahedral viral capsid
J [auth N], K [auth O]	Capsid vertex component 2	-	biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction exit from host cell viral release from host cell viral penetration into host nucleus intracellular transport of virus transport of virus virion assembly viral genome packaging	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle
M [auth R], N [auth S], O [auth T], P [auth i], Q [auth j]	Small capsomere-interacting protein	-	viral process	viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part host cell part host intracellular region cellular anatomical entity host cell nucleus host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth h], B [auth I], E [auth n], F [auth o]	IPR002690	Herpesvirus capsid protein 2	Family
C [auth H], D [auth P]	IPR038765	Papain-like cysteine peptidase superfamily	Homologous Superfamily
C [auth H], D [auth P]	IPR006928	Herpesvirus large tegument protein, USP domain	Domain
C [auth H], D [auth P]	IPR034702	Large tegument protein deneddylase	Family
G [auth g], H [auth m]	IPR004999	Herpesvirus capsid shell protein 1	Family
R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], W [auth Z]	IPR000912	Herpesvirus major capsid protein	Family
R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], R [auth a], S [auth B], T [auth C], U [auth D], V [auth Y], W [auth Z]	IPR023233	Herpesvirus major capsid protein, upper domain superfamily	Homologous Superfamily
J [auth N], K [auth O]	IPR002493	Herpesvirus UL25	Family
M [auth R], N [auth S], O [auth T], P [auth i], Q [auth j]	IPR031385	Small capsid protein, Herpesviridae	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.