7EQD | pdb_00007eqd

STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOSPIRILLUM RUBRUM


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CA [auth 4]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
EA [auth 6]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
G [auth E]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
GA [auth 8]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
I [auth G]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
IA [auth 0]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
K [auth J]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
W [auth X]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
Y [auth Z]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
U [auth V]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
Q [auth R]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
E [auth B]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
AA [auth 2]SCOP2B SuperfamilyLight-harvesting complex subunits 8076357 3000199 SCOP2B (2022-06-29)
DA [auth 5]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
F [auth D]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
J [auth I]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
L [auth K]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
V [auth W]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
Z [auth 1]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
X [auth Y]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
R [auth S]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
HA [auth 9]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
H [auth F]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
FA [auth 7]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
D [auth A]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
BA [auth 3]SCOP2B SuperfamilyLight-harvesting complex subunits 8033868 3000199 SCOP2B (2022-06-29)
B [auth M]SCOP2 FamilyBacterial photosystem II reaction centre, L and M subunits 8103976 4002035 SCOP2 (2022-06-29)
B [auth M]SCOP2 SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8103977 3000736 SCOP2 (2022-06-29)
A [auth L]SCOP2 FamilyBacterial photosystem II reaction centre, L and M subunits 8103952 4002035 SCOP2 (2022-06-29)
A [auth L]SCOP2 SuperfamilyBacterial photosystem II reaction centre, L and M subunits 8103953 3000736 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
CA [auth 4]LbH_EIF2Be7eqd41 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
EA [auth 6]LbH_EIF2Be7eqd61 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
G [auth E]LbH_EIF2Be7eqdE1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
GA [auth 8]LbH_EIF2Be7eqd81 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
I [auth G]LbH_EIF2Be7eqdG1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
IA [auth 0]LbH_EIF2Be7eqd01 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
K [auth J]LbH_EIF2Be7eqdJ1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
M [auth N]LbH_EIF2Be7eqdN1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
S [auth T]LbH_EIF2Be7eqdT1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
W [auth X]LbH_EIF2Be7eqdX1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
Y [auth Z]LbH_EIF2Be7eqdZ1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
U [auth V]LbH_EIF2Be7eqdV1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
Q [auth R]LbH_EIF2Be7eqdR1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
O [auth P]LbH_EIF2Be7eqdP1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
E [auth B]Lyase_8_Ce7eqdB1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Lyase_8_CECOD (develop294)
AA [auth 2]LbH_EIF2Be7eqd21 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
DA [auth 5]LbH_EIF2Be7eqd51 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
F [auth D]LbH_EIF2Be7eqdD1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
J [auth I]LbH_EIF2Be7eqdI1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
L [auth K]LbH_EIF2Be7eqdK1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
P [auth Q]LbH_EIF2Be7eqdQ1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
V [auth W]LbH_EIF2Be7eqdW1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
Z [auth 1]LbH_EIF2Be7eqd11 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
X [auth Y]LbH_EIF2Be7eqdY1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
T [auth U]LbH_EIF2Be7eqdU1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
R [auth S]LbH_EIF2Be7eqdS1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
N [auth O]LbH_EIF2Be7eqdO1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
HA [auth 9]LbH_EIF2Be7eqd91 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
H [auth F]LbH_EIF2Be7eqdF1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
FA [auth 7]LbH_EIF2Be7eqd71 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
D [auth A]Lyase_8_Ce7eqdA1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Lyase_8_CECOD (develop294)
BA [auth 3]LbH_EIF2Be7eqd31 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: LbH_EIF2BECOD (develop294)
C [auth H]Lyase_8_Ce7eqdH1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Lyase_8_CECOD (develop294)
B [auth M]Lyase_8_Ce7eqdM1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Lyase_8_CECOD (develop294)
A [auth L]Lyase_8_Ce7eqdL1 A: alpha bundlesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: Lyase_8_CECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Light-harvesting protein B-870 beta chain
Light-harvesting protein B-870 alpha chain
C [auth H]Photoreaction center protein H-
B [auth M]Reaction center protein M chain
A [auth L]Reaction center protein L chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR000066Antenna complex, alpha/beta subunitDomain
IPR023624Antenna complex, beta domain superfamilyHomologous Superfamily
IPR035889Light-harvesting complexHomologous Superfamily
IPR023623Antenna complex, beta subunit, conserved siteConserved Site
IPR002362Light-harvesting protein B beta chainFamily
IPR000066Antenna complex, alpha/beta subunitDomain
IPR018332Antenna complex, alpha subunitFamily
IPR002361Antenna complex, alpha subunit conserved siteConserved Site
IPR035889Light-harvesting complexHomologous Superfamily
C [auth H]IPR014747Bacterial photosynthetic reaction centre, H-chain, C-terminalHomologous Superfamily
C [auth H]IPR015810Photosynthetic reaction centre, H subunit, N-terminalDomain
C [auth H]IPR005652Photosynthetic reaction centre, H subunitFamily
C [auth H]IPR037097Photosynthetic reaction centre, H subunit, N-terminal domain superfamilyHomologous Superfamily
C [auth H]IPR011033PRC-barrel-like superfamilyHomologous Superfamily
C [auth H]IPR027275PRC-barrel domainDomain
B [auth M]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
B [auth M]IPR005781Photosynthetic reaction centre, M subunitFamily
B [auth M]IPR000484Photosynthetic reaction centre, L/MFamily
B [auth M]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A [auth L]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth L]IPR000484Photosynthetic reaction centre, L/MFamily
A [auth L]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A [auth L]IPR005871Photosynthetic reaction centre, L subunitFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
FME Parent Component: MET

RESIDAA0021 , AA0566

PSI-MOD :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891