STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF RHODOSPIRILLUM RUBRUM
External Resource: Annotation
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Membrane Protein Annotation: mpstruc
- Protein Modification Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| AA [auth 2] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| E [auth B] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| EA [auth 6] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| G [auth E] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| I [auth G] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| IA [auth 0] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| K [auth J] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| M [auth N] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| O [auth P] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| Q [auth R] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| S [auth T] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| U [auth V] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| W [auth X] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| Y [auth Z] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| GA [auth 8] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| CA [auth 4] | SCOP2B Superfamily | Light-harvesting complex subunits | 8076357 | 3000199 | SCOP2B (2022-06-29) |
| BA [auth 3] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| D [auth A] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| DA [auth 5] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| F [auth D] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| H [auth F] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| HA [auth 9] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| J [auth I] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| L [auth K] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| N [auth O] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| R [auth S] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| T [auth U] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| V [auth W] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| X [auth Y] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| Z [auth 1] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| P [auth Q] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| FA [auth 7] | SCOP2B Superfamily | Light-harvesting complex subunits | 8033868 | 3000199 | SCOP2B (2022-06-29) |
| B [auth M] | SCOP2 Family | Bacterial photosystem II reaction centre, L and M subunits | 8103976 | 4002035 | SCOP2 (2022-06-29) |
| B [auth M] | SCOP2 Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8103977 | 3000736 | SCOP2 (2022-06-29) |
| A [auth L] | SCOP2 Family | Bacterial photosystem II reaction centre, L and M subunits | 8103952 | 4002035 | SCOP2 (2022-06-29) |
| A [auth L] | SCOP2 Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8103953 | 3000736 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| AA [auth 2] | LbH_EIF2B | e7eqd21 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| E [auth B] | Lyase_8_C | e7eqdB1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: Lyase_8_C | ECOD (develop294) |
| EA [auth 6] | LbH_EIF2B | e7eqd61 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| G [auth E] | LbH_EIF2B | e7eqdE1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| I [auth G] | LbH_EIF2B | e7eqdG1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| IA [auth 0] | LbH_EIF2B | e7eqd01 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| K [auth J] | LbH_EIF2B | e7eqdJ1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| M [auth N] | LbH_EIF2B | e7eqdN1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| O [auth P] | LbH_EIF2B | e7eqdP1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| Q [auth R] | LbH_EIF2B | e7eqdR1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| S [auth T] | LbH_EIF2B | e7eqdT1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| U [auth V] | LbH_EIF2B | e7eqdV1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| W [auth X] | LbH_EIF2B | e7eqdX1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| Y [auth Z] | LbH_EIF2B | e7eqdZ1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| GA [auth 8] | LbH_EIF2B | e7eqd81 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| CA [auth 4] | LbH_EIF2B | e7eqd41 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| BA [auth 3] | LbH_EIF2B | e7eqd31 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| D [auth A] | Lyase_8_C | e7eqdA1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: Lyase_8_C | ECOD (develop294) |
| DA [auth 5] | LbH_EIF2B | e7eqd51 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| F [auth D] | LbH_EIF2B | e7eqdD1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| H [auth F] | LbH_EIF2B | e7eqdF1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| HA [auth 9] | LbH_EIF2B | e7eqd91 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| J [auth I] | LbH_EIF2B | e7eqdI1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| L [auth K] | LbH_EIF2B | e7eqdK1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| N [auth O] | LbH_EIF2B | e7eqdO1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| R [auth S] | LbH_EIF2B | e7eqdS1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| T [auth U] | LbH_EIF2B | e7eqdU1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| V [auth W] | LbH_EIF2B | e7eqdW1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| X [auth Y] | LbH_EIF2B | e7eqdY1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| Z [auth 1] | LbH_EIF2B | e7eqd11 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| P [auth Q] | LbH_EIF2B | e7eqdQ1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| FA [auth 7] | LbH_EIF2B | e7eqd71 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: RIFT-related | T: FMN-binding split barrel 2 | F: LbH_EIF2B | ECOD (develop294) |
| C [auth H] | Lyase_8_C | e7eqdH1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: Lyase_8_C | ECOD (develop294) |
| B [auth M] | Lyase_8_C | e7eqdM1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: Lyase_8_C | ECOD (develop294) |
| A [auth L] | Lyase_8_C | e7eqdL1 | A: alpha bundles | X: CNF1/YfiH-like putative cysteine hydrolases | H: Bromodomain | T: Bromodomain | F: Lyase_8_C | ECOD (develop294) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00556 | Antenna complex alpha/beta subunit (LHC) | Antenna complex alpha/beta subunit | Domain | ||
| B [auth M] | PF00124 | Photosynthetic reaction centre protein (Photo_RC) | Photosynthetic reaction centre protein | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Light-Harvesting+Reaction Center Complexes | LH1-RC super complex |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 | |














