7ELH | pdb_00007elh

In situ structure of transcriptional enzyme complex and capsid shell protein of mammalian reovirus at initiation state

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	lambda-1	e7elhD1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: lambda-1	ECOD (1.6)
J [auth H]	lambda-1	e7elhH1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: lambda-1	ECOD (1.6)
M [auth J]	lambda-1	e7elhJ1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: lambda-1	ECOD (1.6)
P [auth L]	lambda-1	e7elhL1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: lambda-1	ECOD (1.6)
G [auth F]	lambda-1	e7elhF1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: lambda-1	ECOD (1.6)
B	RdRP_5_3rd	e7elhB4	A: alpha bundles	X: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	H: helical bundle domain in reverse transcriptase-like polymerases (From Topology)	T: helical bundle domain in reverse transcriptase-like polymerases	F: RdRP_5_3rd	ECOD (1.6)
B	RdRP_5_4th	e7elhB2	A: alpha complex topology	X: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	H: C-terminal additional helical subdomain in reovirus polymerase lambda3 (From Topology)	T: C-terminal additional helical subdomain in reovirus polymerase lambda3	F: RdRP_5_4th	ECOD (1.6)
B	RdRP_5_1st	e7elhB3	A: alpha complex topology	X: N-terminal additional helical subdomain in reovirus polymerase lambda3 (From Homology)	H: N-terminal additional helical subdomain in reovirus polymerase lambda3	T: N-terminal additional helical subdomain in reovirus polymerase lambda3	F: RdRP_5_1st	ECOD (1.6)
B	RdRP_5_2nd	e7elhB1	A: a+b two layers	X: Alpha-beta plaits	H: Adenylyl and guanylyl cyclase catalytic domain-like	T: Adenylyl and guanylyl cyclase catalytic domain-like	F: RdRP_5_2nd	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D, F [auth E], G [auth F], I [auth G], J [auth H], D, F [auth E], G [auth F], I [auth G], J [auth H], L [auth I], M [auth J], O [auth K], P [auth L], R [auth M]	PF22033	Inner capsid protein lambda-1/VP3 (Lamba1_VP3)	Inner capsid protein lambda-1/VP3	The reovirus inner capsid protein lambda-1 displays nucleoside triphosphate phosphohydrolase (NTPase),RNA-5'-triphosphatase (RTPase), and RNA helicase activity and may play a role in the transcription of the virus genome, the unwinding or reannealing ...	The reovirus inner capsid protein lambda-1 displays nucleoside triphosphate phosphohydrolase (NTPase),RNA-5'-triphosphatase (RTPase), and RNA helicase activity and may play a role in the transcription of the virus genome, the unwinding or reannealing of double-stranded RNA during RNA synthesis. Lambda1 is an Orthoreovirus core protein, VP3 is the homologous core protein in Aquareoviruses [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
S [auth N], T [auth O], U [auth P], V [auth Q], W [auth R], S [auth N], T [auth O], U [auth P], V [auth Q], W [auth R], X [auth S], Y [auth T], Z [auth U]	RNA (60-MER)	-	-	-
E [auth e], H [auth g], K [auth i], N [auth k], Q [auth m]	Lambda 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity	7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process 7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 5'-end processing metabolic process cellular process RNA processing macromolecule metabolic process	viral capsid icosahedral viral capsid virion component viral inner capsid T=2 icosahedral viral capsid
D, F [auth E], G [auth F], I [auth G], J [auth H], D, F [auth E], G [auth F], I [auth G], J [auth H], L [auth I], M [auth J], O [auth K], P [auth L], R [auth M]	Lambda 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity	7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process 7-methylguanosine mRNA capping RNA metabolic process primary metabolic process 7-methylguanosine RNA capping RNA capping gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process mRNA processing mRNA metabolic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process RNA 5'-end processing metabolic process cellular process RNA processing macromolecule metabolic process	viral capsid icosahedral viral capsid virion component viral inner capsid T=2 icosahedral viral capsid
C	transcript RNA	-	-	-
B	RNA-directed RNA polymerase	RNA-directed RNA polymerase activity 5'-3' RNA polymerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA polymerase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups RNA binding binding nucleic acid binding	viral genome replication viral process viral life cycle	viral nucleocapsid viral capsid virion component
A	Minor core protein mu2	structural molecule activity	-	host cellular component host intracellular part host cytoskeleton cellular anatomical structure host cell part host intracellular region other organism part host intracellular organelle viral capsid virion component host cell cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth e], H [auth g], K [auth i], N [auth k], Q [auth m]	IPR044949	Inner capsid protein lambda-1/ VP3 superfamily	Homologous Superfamily
E [auth e], H [auth g], K [auth i], N [auth k], Q [auth m]	IPR013087	Zinc finger C2H2-type	Domain
E [auth e], H [auth g], K [auth i], N [auth k], Q [auth m]	IPR054176	Inner capsid protein lambda-1/VP3	Domain
D, F [auth E], G [auth F], I [auth G], J [auth H], D, F [auth E], G [auth F], I [auth G], J [auth H], L [auth I], M [auth J], O [auth K], P [auth L], R [auth M]	IPR044949	Inner capsid protein lambda-1/ VP3 superfamily	Homologous Superfamily
D, F [auth E], G [auth F], I [auth G], J [auth H], D, F [auth E], G [auth F], I [auth G], J [auth H], L [auth I], M [auth J], O [auth K], P [auth L], R [auth M]	IPR013087	Zinc finger C2H2-type	Domain
D, F [auth E], G [auth F], I [auth G], J [auth H], D, F [auth E], G [auth F], I [auth G], J [auth H], L [auth I], M [auth J], O [auth K], P [auth L], R [auth M]	IPR054176	Inner capsid protein lambda-1/VP3	Domain
B	IPR007097	RNA-directed RNA polymerase, reovirus	Domain
B	IPR043502	DNA/RNA polymerase superfamily	Homologous Superfamily
B	IPR012915	Reovirus RNA-dependent RNA polymerase lambda 3	Family
A	IPR012494	Reovirus minor core protein, Mu-2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.