7DO5

Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(apo-form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d7do5a1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
A	d7do5a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
B	d7do5b1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
B	d7do5b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
C	d7do5c1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
C	d7do5c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
D	d7do5d1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
D	d7do5d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
E	d7do5e1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
E	d7do5e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
F	d7do5f1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
F	d7do5f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
G	d7do5g1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
G	d7do5g2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
H	d7do5h1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
H	d7do5h2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF13561	e7do5A1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF13561	ECOD (1.6)
B	PF13561	e7do5B1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF13561	ECOD (1.6)
C	PF13561	e7do5C1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF13561	ECOD (1.6)
D	PF13561	e7do5D1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF13561	ECOD (1.6)
E	PF13561	e7do5E1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF13561	ECOD (1.6)
F	PF13561	e7do5F1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF13561	ECOD (1.6)
G	PF13561	e7do5G1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF13561	ECOD (1.6)
H	PF13561	e7do5H1	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: NAD(P)-binding Rossmann-fold domains	F: PF13561	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF13561	Enoyl-(Acyl carrier protein) reductase (adh_short_C2)	Enoyl-(Acyl carrier protein) reductase	This domain is found in Enoyl-(Acyl carrier protein) reductases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Short-chain dehydrogenase/reductase SDR	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity binding nucleoside phosphate binding organic cyclic compound binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002347	Short-chain dehydrogenase/reductase SDR	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.