7DO5 | pdb_00007do5

Crystal structure of Azotobacter vinelandii L-rhamnose 1-dehydrogenase(apo-form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d7do5a1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
A	d7do5a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
B	d7do5b1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
B	d7do5b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
C	d7do5c1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
C	d7do5c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
D	d7do5d1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
D	d7do5d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
E	d7do5e1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
E	d7do5e2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
F	d7do5f1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
F	d7do5f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
G	d7do5g1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
G	d7do5g2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
H	d7do5h1	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	automated matches	automated matches	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)
H	d7do5h2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Azotobacter vinelandii DJ ) [TaxId: 322710 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	SDR-like	8102359	3000038	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e7do5A1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (develop294)
B		e7do5B1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (develop294)
C		e7do5C1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (develop294)
D		e7do5D1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (develop294)
E		e7do5E1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (develop294)
F		e7do5F1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (develop294)
G		e7do5G1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (develop294)
H		e7do5H1	A: alpha bundles	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F:	ECOD (develop294)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Short-chain dehydrogenase/reductase SDR	oxidoreductase activity oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on CH-OH group of donors catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding quinone binding	fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process fatty acid metabolic process monocarboxylic acid biosynthetic process small molecule biosynthetic process oxoacid metabolic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process organic acid biosynthetic process organic acid metabolic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process monocarboxylic acid metabolic process lipid metabolic process rhamnose catabolic process monosaccharide metabolic process carbohydrate metabolic process catabolic process hexose catabolic process carbohydrate catabolic process hexose metabolic process monosaccharide catabolic process small molecule catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR057326	Ketoreductase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR002347	Short-chain dehydrogenase/reductase SDR	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.