7DIB | pdb_00007dib

Crystal structure of D-threonine aldolase from Filomicrobium marinum

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BHATPase_ce7dibB1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: RIFT-relatedT: FMN-binding split barrel 2F: HATPase_cECOD (v294.1)
Azf-HC5HC2He7dibA1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: BromodomainT: BromodomainF: zf-HC5HC2HECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF14031Putative serine dehydratase domain (D-ser_dehydrat)Putative serine dehydratase domainThis domain is found at the C-terminus of yeast D-serine dehydratase [1]. Structures have been solved for two bacterial members of this family. The yeast protein has been shown to be a zinc dependent enzyme. Domain
A, B
PF01168Alanine racemase, N-terminal domain (Ala_racemase_N)Alanine racemase, N-terminal domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
D-threonine aldolase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR029066PLP-binding barrelHomologous Superfamily
A, B
IPR042208D-serine dehydratase-like domain superfamilyHomologous Superfamily
A, B
IPR026956D-serine dehydratase-like domainDomain
A, B
IPR051466D-amino acid metabolism enzymeFamily
A, B
IPR001608Alanine racemase, N-terminalDomain

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A, B
LLP Parent Component: LYS

RESID:  AA0119

PSI-MOD :  N6-pyridoxal phosphate-L-lysine MOD:00128