7CPJ | pdb_00007cpj

ycbZ-stalled 70S ribosome

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth f]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
AB [auth 5]SCOP2 FamilyRibosomal protein L10-like 8105583 4001998 SCOP2 (2022-06-29)
AB [auth 5]SCOP2 SuperfamilyRibosomal protein L10-like 8105584 3000665 SCOP2 (2022-06-29)
PA [auth U]SCOP2 FamilyRibosomal proteins L24p and L21e 8105761 4001752 SCOP2 (2022-06-29)
PA [auth U]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8105762 3000334 SCOP2 (2022-06-29)
D [auth d]SCOP2 FamilyRibosomal protein S4 8105961 4001399 SCOP2 (2022-06-29)
D [auth d]SCOP2 SuperfamilyAlpha-L RNA-binding motif 8105962 3001473 SCOP2 (2022-06-29)
GA [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8096018 3001045 SCOP2B (2022-06-29)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8097404 3001397 SCOP2B (2022-06-29)
Q [auth q]SCOP2 FamilyCold shock DNA-binding domain-like 8105955 4001909 SCOP2 (2022-06-29)
Q [auth q]SCOP2 SuperfamilyNucleic acid-binding proteins 8105956 3000135 SCOP2 (2022-06-29)
M [auth m]SCOP2B SuperfamilyS13-like H2TH domain 8096244 3000053 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth i]V-sete7cpji1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
H [auth h]V-sete7cpjh1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
G [auth g]V-sete7cpjg1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
F [auth f]V-sete7cpjf1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
BB [auth 6]V-sete7cpj61 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
AB [auth 5]V-sete7cpj51 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
ZA [auth 4]V-sete7cpj41 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
YA [auth 3]V-sete7cpj31 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
XA [auth 2]V-sete7cpj21 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
E [auth e]V-sete7cpje1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
WA [auth 1]V-sete7cpj11 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
VA [auth 0]V-sete7cpj01 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
UA [auth Z]V-sete7cpjZ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
TA [auth Y]V-sete7cpjY1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
SA [auth X]V-sete7cpjX1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
RA [auth W]V-sete7cpjW1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
QA [auth V]V-sete7cpjV1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
PA [auth U]V-sete7cpjU1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
OA [auth T]V-sete7cpjT1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
NA [auth S]V-sete7cpjS1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
D [auth d]V-sete7cpjd1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
MA [auth R]V-sete7cpjR1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
LA [auth Q]V-sete7cpjQ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
KA [auth P]V-sete7cpjP1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
JA [auth O]V-sete7cpjO1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
IA [auth N]V-sete7cpjN1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
HA [auth M]V-sete7cpjM1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
GA [auth L]V-sete7cpjL1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
FA [auth K]V-sete7cpjK1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
EA [auth J]V-sete7cpjJ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
DA [auth I]V-sete7cpjI1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
C [auth c]V-sete7cpjc1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
CA [auth H]V-sete7cpjH1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
BA [auth G]V-sete7cpjG1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
AA [auth F]V-sete7cpjF1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
Z [auth E]V-sete7cpjE1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
Y [auth D]V-sete7cpjD1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
X [auth C]V-sete7cpjC1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
U [auth u]V-sete7cpju1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
T [auth t]V-sete7cpjt1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
B [auth b]V-sete7cpjb1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
S [auth s]V-sete7cpjs1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
R [auth r]V-sete7cpjr1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
Q [auth q]V-sete7cpjq1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
P [auth p]V-sete7cpjp1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
O [auth o]V-sete7cpjo1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
N [auth n]V-sete7cpjn1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
M [auth m]V-sete7cpjm1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
L [auth l]V-sete7cpjl1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
K [auth k]V-sete7cpjk1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)
J [auth j]V-sete7cpjj1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: V-setECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
AA [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth i]30S ribosomal protein S9---
H [auth h]30S ribosomal protein S8---
G [auth g]30S ribosomal protein S7---
F [auth f]30S ribosomal protein S6
DB [auth x]mRNA---
CB [auth 9]P/P tRNA---
BB [auth 6]50S ribosomal protein L31---
AB [auth 5]50S ribosomal protein L10---
ZA [auth 4]50S ribosomal protein L36---
YA [auth 3]50S ribosomal protein L35---
XA [auth 2]50S ribosomal protein L34---
E [auth e]30S ribosomal protein S5---
WA [auth 1]50S ribosomal protein L33---
VA [auth 0]50S ribosomal protein L32---
UA [auth Z]50S ribosomal protein L30---
TA [auth Y]50S ribosomal protein L29---
SA [auth X]50S ribosomal protein L28---
RA [auth W]50S ribosomal protein L27---
QA [auth V]50S ribosomal protein L25---
PA [auth U]50S ribosomal protein L24---
OA [auth T]50S ribosomal protein L23---
NA [auth S]50S ribosomal protein L22---
D [auth d]30S ribosomal protein S4---
MA [auth R]50S ribosomal protein L21---
LA [auth Q]50S ribosomal protein L20---
KA [auth P]50S ribosomal protein L19---
JA [auth O]50S ribosomal protein L18---
IA [auth N]50S ribosomal protein L17---
HA [auth M]50S ribosomal protein L16---
GA [auth L]50S ribosomal protein L15
FA [auth K]50S ribosomal protein L14---
EA [auth J]50S ribosomal protein L13---
DA [auth I]50S ribosomal protein L11---
C [auth c]30S ribosomal protein S3---
CA [auth H]50S ribosomal protein L9---
BA [auth G]50S ribosomal protein L6---
AA [auth F]50S ribosomal protein L5---
Z [auth E]50S ribosomal protein L4---
Y [auth D]50S ribosomal protein L3---
X [auth C]50S ribosomal protein L2---
W [auth B]5S ribosomal RNA---
V [auth A]23S ribosomal RNA---
U [auth u]30S ribosomal protein S21---
T [auth t]30S ribosomal protein S20---
B [auth b]30S ribosomal protein S2
S [auth s]30S ribosomal protein S19---
R [auth r]30S ribosomal protein S18---
Q [auth q]30S ribosomal protein S17---
P [auth p]30S ribosomal protein S16---
O [auth o]30S ribosomal protein S15---
N [auth n]30S ribosomal protein S14---
M [auth m]30S ribosomal protein S13
L [auth l]30S ribosomal protein S12---
K [auth k]30S ribosomal protein S11---
J [auth j]30S ribosomal protein S10---
A [auth a]16S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
GA [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
GA [auth L]IPR030878Large ribosomal subunit protein uL15Family
GA [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
GA [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
GA [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily