7CPJ | pdb_00007cpj

ycbZ-stalled 70S ribosome


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
Q [auth q]SCOP2 FamilyCold shock DNA-binding domain-like 8105955 4001909 SCOP2 (2022-06-29)
Q [auth q]SCOP2 SuperfamilyNucleic acid-binding proteins 8105956 3000135 SCOP2 (2022-06-29)
F [auth f]SCOP2B SuperfamilyRibosomal protein S6 8066495 3001323 SCOP2B (2022-06-29)
AB [auth 5]SCOP2 FamilyRibosomal protein L10-like 8105583 4001998 SCOP2 (2022-06-29)
AB [auth 5]SCOP2 SuperfamilyRibosomal protein L10-like 8105584 3000665 SCOP2 (2022-06-29)
PA [auth U]SCOP2 FamilyRibosomal proteins L24p and L21e 8105761 4001752 SCOP2 (2022-06-29)
PA [auth U]SCOP2 SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8105762 3000334 SCOP2 (2022-06-29)
D [auth d]SCOP2 FamilyRibosomal protein S4 8105961 4001399 SCOP2 (2022-06-29)
D [auth d]SCOP2 SuperfamilyAlpha-L RNA-binding motif 8105962 3001473 SCOP2 (2022-06-29)
GA [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8096018 3001045 SCOP2B (2022-06-29)
B [auth b]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8097404 3001397 SCOP2B (2022-06-29)
M [auth m]SCOP2B SuperfamilyS13-like H2TH domain 8096244 3000053 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Q [auth q]Ribosomal_S17_1e7cpjq1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_S17_1ECOD (1.6)
YA [auth 3]Ribosomal_L35pe7cpj31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: Ribosomal_L35pECOD (1.6)
I [auth i]Ribosomal_S9e7cpji1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S9ECOD (1.6)
H [auth h]Ribosomal_S8_Ne7cpjh2 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: Ribosomal_S8_NECOD (1.6)
H [auth h]Ribosomal_S8_Ce7cpjh1 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: Ribosomal_S8_CECOD (1.6)
G [auth g]Ribosomal_S7_1e7cpjg1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: Ribosomal_S7_1ECOD (1.6)
F [auth f]Ribosomal_S6e7cpjf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S6 (From Topology)T: Ribosomal protein S6F: Ribosomal_S6ECOD (1.6)
BB [auth 6]Ribosomal_L31e7cpj61 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: Ribosomal_L31ECOD (1.6)
AB [auth 5]Ribosomal_L10e7cpj51 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: Ribosomal_L10ECOD (1.6)
ZA [auth 4]Ribosomal_L36e7cpj41 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: Ribosomal_L36ECOD (1.6)
XA [auth 2]Ribosomal_L34e7cpj21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: Ribosomal_L34ECOD (1.6)
E [auth e]Ribosomal_S5_Ce7cpje1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: Ribosomal_S5_CECOD (1.6)
E [auth e]Ribosomal_S5e7cpje2 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: Ribosomal_S5ECOD (1.6)
WA [auth 1]Ribosomal_L33e7cpj11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L33ECOD (1.6)
VA [auth 0]Ribosomal_L32pe7cpj01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: Ribosomal_L32pECOD (1.6)
UA [auth Z]Ribosomal_L30e7cpjZ1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: Ribosomal_L30ECOD (1.6)
TA [auth Y]Ribosomal_L29e7cpjY1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: Ribosomal_L29ECOD (1.6)
SA [auth X]Ribosomal_L28e7cpjX1 A: few secondary structure elementsX: Ribosomal protein bL28-related (From Homology)H: Ribosomal protein bL28-relatedT: Ribosomal protein L28F: Ribosomal_L28ECOD (1.6)
RA [auth W]Ribosomal_L27e7cpjW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: Ribosomal_L27ECOD (1.6)
QA [auth V]Ribosomal_L25pe7cpjV1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: Ribosomal_L25pECOD (1.6)
PA [auth U]ribosomal_L24_1e7cpjU1 A: beta barrelsX: SH3H: SH3T: SH3F: ribosomal_L24_1ECOD (1.6)
OA [auth T]Ribosomal_L23_2e7cpjT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: Ribosomal_L23_2ECOD (1.6)
NA [auth S]Ribosomal_L22e7cpjS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: Ribosomal_L22ECOD (1.6)
D [auth d]S4e7cpjd1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: S4ECOD (1.6)
MA [auth R]Ribosomal_L21pe7cpjR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: Ribosomal_L21pECOD (1.6)
LA [auth Q]Ribosomal_L20e7cpjQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: Ribosomal_L20ECOD (1.6)
KA [auth P]Ribosomal_L19e7cpjP1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L19ECOD (1.6)
JA [auth O]Ribosomal_L18pe7cpjO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_L18pECOD (1.6)
IA [auth N]Ribosomal_L17_1e7cpjN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: Ribosomal_L17_1ECOD (1.6)
HA [auth M]Ribosomal_L16e7cpjM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: Ribosomal_L16ECOD (1.6)
GA [auth L]Ribosomal_L27Ae7cpjL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: Ribosomal_L27AECOD (1.6)
FA [auth K]Ribosomal_L14e7cpjK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: Ribosomal_L14ECOD (1.6)
EA [auth J]Ribosomal_L13e7cpjJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: Ribosomal_L13ECOD (1.6)
DA [auth I]Ribosomal_L11e7cpjI2 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: Ribosomal_L11ECOD (1.6)
DA [auth I]Ribosomal_L11_Ne7cpjI1 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: Ribosomal_L11_NECOD (1.6)
C [auth c]Ribosomal_S3_Ce7cpjc1 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: Ribosomal_S3_CECOD (1.6)
C [auth c]KH_2_1e7cpjc2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: KH_2_1ECOD (1.6)
CA [auth H]Ribosomal_L9_Ne7cpjH2 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: Ribosomal_L9_NECOD (1.6)
CA [auth H]Ribosomal_L9_C_1e7cpjH1 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: Ribosomal_L9_C_1ECOD (1.6)
BA [auth G]Ribosomal_L6e7cpjG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6ECOD (1.6)
BA [auth G]Ribosomal_L6_1e7cpjG1 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: Ribosomal_L6_1ECOD (1.6)
AA [auth F]Ribosomal_L5_Ce7cpjF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: Ribosomal_L5_CECOD (1.6)
Z [auth E]Ribosomal_L4e7cpjE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: Ribosomal_L4ECOD (1.6)
Y [auth D]Ribosomal_L3e7cpjD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: Ribosomal_L3ECOD (1.6)
X [auth C]Ribosomal_L2_1e7cpjC2 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosomal_L2_1ECOD (1.6)
X [auth C]Ribosomal_L2_Ce7cpjC1 A: beta barrelsX: SH3H: SH3T: SH3F: Ribosomal_L2_CECOD (1.6)
U [auth u]Ribosomal_S21e7cpju1 A: extended segmentsX: 30S ribosomal protein S21 (From Topology)H: 30S ribosomal protein S21 (From Topology)T: 30S ribosomal protein S21F: Ribosomal_S21ECOD (1.6)
T [auth t]Ribosomal_S20pe7cpjt1 A: alpha bundlesX: Spectrin repeat-likeH: Ribosomal protein S20 (From Topology)T: Ribosomal protein S20F: Ribosomal_S20pECOD (1.6)
B [auth b]Ribosomal_S2e7cpjb1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: Ribosomal_S2ECOD (1.6)
S [auth s]Ribosomal_S19e7cpjs1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: Ribosomal_S19ECOD (1.6)
R [auth r]Ribosomal_S18e7cpjr1 A: alpha arraysX: HTHH: HTHT: tri-helicalF: Ribosomal_S18ECOD (1.6)
P [auth p]Ribosomal_S16e7cpjp1 A: a+b two layersX: Ribosomal protein S16 (From Topology)H: Ribosomal protein S16 (From Topology)T: Ribosomal protein S16F: Ribosomal_S16ECOD (1.6)
O [auth o]Ribosomal_S15_1e7cpjo1 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: Ribosomal_S15_1ECOD (1.6)
N [auth n]Ribosomal_S14_1e7cpjn1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: Ribosomal_S14_1ECOD (1.6)
M [auth m]Ribosomal_S13_1e7cpjm1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: Ribosomal_S13_1ECOD (1.6)
L [auth l]Ribosom_S12_S23e7cpjl1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: Ribosom_S12_S23ECOD (1.6)
K [auth k]Ribosomal_S11e7cpjk1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: Ribosomal_S11ECOD (1.6)
J [auth j]Ribosomal_S10e7cpjj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: Ribosomal_S10ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
HA [auth M]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
GA [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
AA [auth F]PF01250Ribosomal protein S6 (Ribosomal_S6)Ribosomal protein S6Domain
W [auth B]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Q [auth q]30S ribosomal protein S17---
YA [auth 3]50S ribosomal protein L35---
I [auth i]30S ribosomal protein S9---
H [auth h]30S ribosomal protein S8---
G [auth g]30S ribosomal protein S7---
F [auth f]30S ribosomal protein S6
DB [auth x]mRNA---
CB [auth 9]P/P tRNA---
BB [auth 6]50S ribosomal protein L31---
AB [auth 5]50S ribosomal protein L10---
ZA [auth 4]50S ribosomal protein L36---
XA [auth 2]50S ribosomal protein L34---
E [auth e]30S ribosomal protein S5---
WA [auth 1]50S ribosomal protein L33---
VA [auth 0]50S ribosomal protein L32---
UA [auth Z]50S ribosomal protein L30---
TA [auth Y]50S ribosomal protein L29---
SA [auth X]50S ribosomal protein L28---
RA [auth W]50S ribosomal protein L27---
QA [auth V]50S ribosomal protein L25---
PA [auth U]50S ribosomal protein L24---
OA [auth T]50S ribosomal protein L23---
NA [auth S]50S ribosomal protein L22---
D [auth d]30S ribosomal protein S4---
MA [auth R]50S ribosomal protein L21---
LA [auth Q]50S ribosomal protein L20---
KA [auth P]50S ribosomal protein L19---
JA [auth O]50S ribosomal protein L18---
IA [auth N]50S ribosomal protein L17---
HA [auth M]50S ribosomal protein L16---
GA [auth L]50S ribosomal protein L15
FA [auth K]50S ribosomal protein L14---
EA [auth J]50S ribosomal protein L13---
DA [auth I]50S ribosomal protein L11---
C [auth c]30S ribosomal protein S3---
CA [auth H]50S ribosomal protein L9---
BA [auth G]50S ribosomal protein L6---
AA [auth F]50S ribosomal protein L5---
Z [auth E]50S ribosomal protein L4---
Y [auth D]50S ribosomal protein L3---
X [auth C]50S ribosomal protein L2---
W [auth B]5S ribosomal RNA---
V [auth A]23S ribosomal RNA---
U [auth u]30S ribosomal protein S21---
T [auth t]30S ribosomal protein S20---
B [auth b]30S ribosomal protein S2
S [auth s]30S ribosomal protein S19---
R [auth r]30S ribosomal protein S18---
P [auth p]30S ribosomal protein S16---
O [auth o]30S ribosomal protein S15---
N [auth n]30S ribosomal protein S14---
M [auth m]30S ribosomal protein S13
L [auth l]30S ribosomal protein S12---
K [auth k]30S ribosomal protein S11---
J [auth j]30S ribosomal protein S10---
A [auth a]16S ribosomal RNA---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
F [auth f]IPR020815Small ribosomal subunit protein bS6, conserved siteConserved Site
F [auth f]IPR000529Small ribosomal subunit protein bS6Family
F [auth f]IPR020814Small ribosomal subunit protein bS6, plastid/chloroplastFamily
F [auth f]IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
F [auth f]IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
GA [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
GA [auth L]IPR030878Large ribosomal subunit protein uL15Family
GA [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
GA [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
GA [auth L]IPR005749Large ribosomal subunit protein uL15, bacteriaFamily
B [auth b]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
B [auth b]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
B [auth b]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
B [auth b]IPR001865Small ribosomal subunit protein uS2Family
M [auth m]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
M [auth m]IPR001892Small ribosomal subunit protein uS13Family
M [auth m]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
M [auth m]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
M [auth m]IPR019980Small ribosomal subunit protein uS13, bacteriaFamily