7C90 | pdb_00007c90

Crystal structure of Cytochrome CL from the marine methylotrophic bacterium Methylophaga aminisulfidivorans MPT (Ma-CytcL)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d7c90a_	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Methylophaga thalassica MP ) [TaxId: 1026882 ],	SCOPe (2.08)
B	d7c90b_	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Methylophaga thalassica MP ) [TaxId: 1026882 ],	SCOPe (2.08)
C	d7c90c_	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Methylophaga thalassica MP ) [TaxId: 1026882 ],	SCOPe (2.08)
D	d7c90d_	All alpha proteins	Cytochrome c	Cytochrome c	automated matches	automated matches	(Methylophaga thalassica MP ) [TaxId: 1026882 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Monodomain cytochrome c	8097773	4000635	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cytochrome c	8097774	3000815	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Cytochrome c	8097774	3000815	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cytochrome c	8097774	3000815	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cytochrome c	8097774	3000815	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CSD	e7c90A1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	T: Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	F: CSD	ECOD (v294.1)
B	Pyr_redox_2	e7c90B1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pyr_redox_2	ECOD (v294.1)
C	Pyr_redox_2	e7c90C1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pyr_redox_2	ECOD (v294.1)
D	Pyr_redox_2	e7c90D1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Pyr_redox_2	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF13442	Cytochrome C oxidase, cbb3-type, subunit III (Cytochrome_CBB3)	Cytochrome C oxidase, cbb3-type, subunit III		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Cytochrome c, mono-and diheme variant	binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	-	cellular anatomical structure extracellular region periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A, B, C, D	IPR050597	Cytochrome c Oxidase Subunit	Family
A, B, C, D	IPR009056	Cytochrome c-like domain	Domain
A, B, C, D	IPR009153	Cytochrome cL	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.