7ARD | pdb_00007ard

Cryo-EM structure of Polytomella Complex-I (complete composition)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IFer4_21_1e7ardI1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
HNADHdhe7ardH1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit 8 (Nqo8)-relatedF: NADHdhECOD (1.6)
GPRK09129e7ardG6 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: PRK09129ECOD (1.6)
GFer2_4e7ardG3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Fer2_4ECOD (1.6)
GMolybdop_Fe4S4_1e7ardG4 A: a+b two layersX: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)H: Formate dehydrogenase/DMSO reductase, domain 1 (From Topology)T: Formate dehydrogenase/DMSO reductase, domain 1F: Molybdop_Fe4S4_1ECOD (1.6)
GMolybdopterin_2nde7ardG1 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: Molybdopterin_2ndECOD (1.6)
GMolybdopterin_1ste7ardG2 A: a/b three-layered sandwichesX: Rossmann-likeH: Formate dehydrogenase/DMSO reductase, domains 2 and 3 (From Topology)T: Formate dehydrogenase/DMSO reductase, domains 2 and 3F: Molybdopterin_1stECOD (1.6)
GNADH-G_4Fe-4S_3e7ardG5 A: extended segmentsX: iron-sulfur center-binding helical hairpin (From Topology)H: iron-sulfur center-binding helical hairpin (From Topology)T: iron-sulfur center-binding helical hairpinF: NADH-G_4Fe-4S_3ECOD (1.6)
FNADH_4Fe-4Se7ardF2 A: alpha bundlesX: Bromodomain-likeH: Nqo1C-terminal domain-like (From Topology)T: Nqo1C-terminal domain-likeF: NADH_4Fe-4SECOD (1.6)
FSLBBe7ardF3 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Nqo1 middle domain-likeF: SLBBECOD (1.6)
FComplex1_51Ke7ardF1 A: a/b three-layered sandwichesX: Nqo1 FMN-binding domain-like (From Topology)H: Nqo1 FMN-binding domain-like (From Topology)T: Nqo1 FMN-binding domain-likeF: Complex1_51KECOD (1.6)
E2Fe-2S_thioredx_Ne7ardE1 A: alpha bundlesX: NQO2 helical bundle domain (From Topology)H: NQO2 helical bundle domain (From Topology)T: NQO2 helical bundle domainF: 2Fe-2S_thioredx_NECOD (1.6)
E2Fe-2S_thioredx_Ce7ardE2 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: 2Fe-2S_thioredx_CECOD (1.6)
DComplex1_49kDa_1ste7ardD1 A: alpha complex topologyX: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)H: alpha-helical domain in nickel-iron hydrogenase, large subunit (From Topology)T: alpha-helical domain in nickel-iron hydrogenase, large subunitF: Complex1_49kDa_1stECOD (1.6)
DNuoDe7ardD3 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)T: Ni-Fe binding domain in nickel-iron hydrogenase large subunitF: NuoDECOD (1.6)
DComplex1_49kDa_2nde7ardD2 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: Ni-Fe binding domain in nickel-iron hydrogenase large subunit (From Topology)T: Ni-Fe binding domain in nickel-iron hydrogenase large subunitF: Complex1_49kDa_2ndECOD (1.6)
EA [auth e]Ndufs5e7arde1 A: alpha bundlesX: cytochrome bc1 complex 11 kDa protein-likeH: CHCH domain (From Topology)T: CHCH domainF: Ndufs5ECOD (1.6)
CComplex1_30kDae7ardC1 A: a+b two layersX: Nqo5-likeH: Nqo5-like (From Topology)T: Nqo5-likeF: Complex1_30kDaECOD (1.6)
AA [auth a]F_UNCLASSIFIEDe7arda1 A: extended segmentsX: Mitochondrial complex I, MWFE subunit (From Topology)H: Mitochondrial complex I, MWFE subunit (From Topology)T: Mitochondrial complex I, MWFE subunitF: F_UNCLASSIFIEDECOD (1.6)
ZGRIM-19e7ardZ1 A: extended segmentsX: Mitochondrial complex I, B16.6 subunit (From Topology)H: Mitochondrial complex I, B16.6 subunit (From Topology)T: Mitochondrial complex I, B16.6 subunitF: GRIM-19ECOD (1.6)
XF_UNCLASSIFIEDe7ardX2 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: F_UNCLASSIFIEDECOD (1.6)
XCHCHe7ardX1 A: few secondary structure elementsX: p8-MTCP1-related (From Topology)H: p8-MTCP1-related (From Topology)T: p8-MTCP1-relatedF: CHCHECOD (1.6)
WComplex1_LYRe7ardW1 A: alpha bundlesX: LYR protein (From Topology)H: LYR protein (From Topology)T: LYR proteinF: Complex1_LYRECOD (1.6)
UPP-bindinge7ardU1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PP-bindingECOD (1.6)
TPP-bindinge7ardT1 A: alpha bundlesX: ACP-likeH: Acyl-carrier protein (ACP) (From Topology)T: Acyl-carrier protein (ACP)F: PP-bindingECOD (1.6)
BOxidored_q6e7ardB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: CheY-likeF: Oxidored_q6ECOD (1.6)
SL51_S25_CI-B8e7ardS1 A: a+b three layersX: Thioredoxin-likeH: Thioredoxin-like (From Topology)T: Thioredoxin-likeF: L51_S25_CI-B8ECOD (1.6)
QETC_C1_NDUFA4e7ardQ1 A: a+b two layersX: Putative oxidoreductase (From Topology)H: Putative oxidoreductase (From Topology)T: Putative oxidoreductaseF: ETC_C1_NDUFA4ECOD (1.6)
PNmrAe7ardP1 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: NAD(P)-binding Rossmann-fold domainsF: NmrAECOD (1.6)
OF_UNCLASSIFIEDe7ardO1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: F_UNCLASSIFIEDECOD (1.6)
NF_UNCLASSIFIEDe7ardN1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: F_UNCLASSIFIEDECOD (1.6)
MProton_antipo_Me7ardM1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
LProton_antipo_Me7ardL1 A: alpha complex topologyX: Sodium/proton antiporter subunits-like (From Homology)H: Sodium/proton antiporter subunits-likeT: NADH-quinone oxidoreductase subunit L (NuoL)-relatedF: Proton_antipo_MECOD (1.6)
KOxidored_q2e7ardK1 A: alpha complex topologyX: NADH-quinone oxidoreductase subunit K (From Topology)H: NADH-quinone oxidoreductase subunit K (From Topology)T: NADH-quinone oxidoreductase subunit KF: Oxidored_q2ECOD (1.6)
JOxidored_q3e7ardJ1 A: extended segmentsX: NADH-quinone oxidoreductase subunit J (From Topology)H: NADH-quinone oxidoreductase subunit J (From Topology)T: NADH-quinone oxidoreductase subunit JF: Oxidored_q3ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05347Complex 1 protein (LYR family) (Complex1_LYR)Complex 1 protein (LYR family)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
TYKY---
ND1---
75 kDa---
51 kDa---
YA [auth z]CA3---
XA [auth y]CA2---
24 kDa---
WA [auth x]CAL---
VA [auth w]unknown---
UA [auth u]unknown---
TA [auth t]NUOP8---
SA [auth s]NUOP7---
RA [auth r]B14.5a---
QA [auth q]B17.2---
PA [auth p]PDSW---
OA [auth o]B18---
NA [auth n]Complex I-B22-
ND7---
MA [auth m]B15---
LA [auth l]ASHI---
KA [auth k]B12---
JA [auth j]AGGG---
IA [auth i]NUOP5---
HA [auth h]NUOP4---
GA [auth g]ESSS---
FA [auth f]MNLL---
EA [auth e]15 kDa---
DA [auth d]B14.5b---
ND9---
CA [auth c]KFYI---
BA [auth b]B9---
AA [auth a]MWFE---
B16.6---
B14.7---
PGIV---
B14---
B13---
SDAP2---
SDAP1---
PSST---
B8---
13 kDa---
18 kDa---
39 kDa---
C1-FDX---
ND2---
ND4---
ND5---
ND4L---
ND6---
ND3---