7ARD | pdb_00007ard

Cryo-EM structure of Polytomella Complex-I (complete composition)

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
INDUS4e7ardI1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: NDUS4ECOD (v294.1)
HDynamin_N,Dynamin_Me7ardH1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
GDynamin_N,Dynamin_Me7ardG1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
FDynamin_N,Dynamin_Me7ardF1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
EDynamin_N,Dynamin_Me7ardE1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
DGlyco_transf_41e7ardD1 A: a/b three-layered sandwichesX: RNase A-likeH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: Glyco_transf_41ECOD (v294.1)
EA [auth e]Dynamin_N,Dynamin_Me7arde1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
CDynamin_N,Dynamin_Me7ardC1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
AA [auth a]Dynamin_N,Dynamin_Me7arda1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
ZDynamin_N,Dynamin_Me7ardZ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
XDynamin_N,Dynamin_Me7ardX1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
WDynamin_N,Dynamin_Me7ardW1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
UDynamin_N,Dynamin_Me7ardU1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
TDynamin_N,Dynamin_Me7ardT1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
BDynamin_N,Dynamin_Me7ardB1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
SDynamin_N,Dynamin_Me7ardS1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
QNDUS4e7ardQ1 A: a/b three-layered sandwichesX: RNase A-likeH: Cytochrome P450T: Cytochrome P450F: NDUS4ECOD (v294.1)
PDynamin_N,Dynamin_Me7ardP1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
ODynamin_N,Dynamin_Me7ardO1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
NDynamin_N,Dynamin_Me7ardN1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
MDynamin_N,Dynamin_Me7ardM1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
LDynamin_N,Dynamin_Me7ardL1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
KDynamin_N,Dynamin_Me7ardK1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)
JDynamin_N,Dynamin_Me7ardJ1 A: a/b three-layered sandwichesX: CNF1/YfiH-like putative cysteine hydrolasesH: CNF1/YfiH-like putative cysteine hydrolasesT: CNF1/YfiH-like putative cysteine hydrolasesF: Dynamin_N,Dynamin_MECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
YA [auth z]2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase domain 1CATH (utative)
XA [auth y]2.160.10.10 Mainly Beta 3 Solenoid UDP N-Acetylglucosamine Acyltransferase domain 1CATH (utative)
D1.10.645.10 Mainly Alpha Orthogonal Bundle Cytochrome-c3 Hydrogenase chain BCATH (utative)
B3.40.50.12280 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (utative)
P3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (utative)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
TYKY---
ND1---
75 kDa---
51 kDa---
YA [auth z]CA3---
XA [auth y]CA2---
24 kDa---
WA [auth x]CAL---
VA [auth w]unknown---
UA [auth u]unknown---
TA [auth t]NUOP8---
SA [auth s]NUOP7---
RA [auth r]B14.5a---
QA [auth q]B17.2---
PA [auth p]PDSW---
OA [auth o]B18---
NA [auth n]Complex I-B22-
ND7---
MA [auth m]B15---
LA [auth l]ASHI---
KA [auth k]B12---
JA [auth j]AGGG---
IA [auth i]NUOP5---
HA [auth h]NUOP4---
GA [auth g]ESSS---
FA [auth f]MNLL---
EA [auth e]15 kDa---
DA [auth d]B14.5b---
ND9---
CA [auth c]KFYI---
BA [auth b]B9---
AA [auth a]MWFE---
B16.6---
B14.7---
PGIV---
B14---
B13---
SDAP2---
SDAP1---
PSST---
B8---
13 kDa---
18 kDa---
39 kDa---
C1-FDX---
ND2---
ND4---
ND5---
ND4L---
ND6---
ND3---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
NA [auth n]IPR033034NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9Family
NA [auth n]IPR008011Complex 1 LYR protein domainDomain
NA [auth n]IPR045292NDUFB9, LYR domainDomain

Membrane Protein Annotation: OPM OPM Database Homepage

ChainsExternal LinkTypeClassSuperfamilyFamily
OPMTransmembraneAlpha-helical polytopicElectron transport chain complex I (NADH dehydrogenase) and supercomplexesH+ or Na+ translocating NADH dehydrogenase

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

ChainsExternal LinkComment
PDBTMAnnotated as membrane protein by PDBTM

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

ChainsResource LinkGroupSubgroupProtein
mpstrucTRANSMEMBRANE PROTEINS: ALPHA-HELICALElectron Transport Chain Complexes: Complex IMitochondrial Complex I, complete composition