7ZS6 | pdb_00007zs6

Crystal structure of Apis mellifera RidA

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
C [auth CCC]Ribonuc_L-PSPe7zs6CCC1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: Ribonuc_L-PSPECOD (1.6)
B [auth BBB]Ribonuc_L-PSPe7zs6BBB1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: Ribonuc_L-PSPECOD (1.6)
A [auth AAA]Ribonuc_L-PSPe7zs6AAA1 A: a+b three layersX: Bacillus chorismate mutase-likeH: YjgF-like (From Topology)T: YjgF-likeF: Ribonuc_L-PSPECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth AAA],
B [auth BBB],
C [auth CCC]		PF01042Endoribonuclease L-PSP (Ribonuc_L-PSP)Endoribonuclease L-PSPEndoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. Yjg ...Endoribonuclease active on single-stranded mRNA. Inhibits protein synthesis by cleavage of mRNA [1]. Previously thought to inhibit protein synthesis initiation [2]. This protein may also be involved in the regulation of purine biosynthesis [3]. YjgF (renamed RidA) family members are enamine/imine deaminases. They hydrolyze reactive intermediates released by PLP-dependent enzymes, including threonine dehydratase [5]. YjgF also prevents inhibition of transaminase B (IlvE) in Salmonella [4].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth AAA],
B [auth BBB],
C [auth CCC]		Reactive intermediate deaminase A -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth AAA],
B [auth BBB],
C [auth CCC]		IPR019897RidA, conserved siteConserved Site
A [auth AAA],
B [auth BBB],
C [auth CCC]		IPR006056RidA familyFamily
A [auth AAA],
B [auth BBB],
C [auth CCC]		IPR035959RutC-like superfamilyHomologous Superfamily
A [auth AAA],
B [auth BBB],
C [auth CCC]		IPR006175YjgF/YER057c/UK114 familyFamily