7ZJW

Rabbit 80S ribosome as it decodes the Sec-UGA codon


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
J [auth LE]SCOP2B SuperfamilyTranslational proteins8078357 3000811 SCOP2B (2022-06-29)
L [auth LG]SCOP2B SuperfamilyTranslational machinery components8052886 3000571 SCOP2B (2022-06-29)
U [auth LQ]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8082477 3000210 SCOP2B (2022-06-29)
BA [auth LX]SCOP2B Superfamily60S Ribosomal protein L22e8103987 3002158 SCOP2B (2022-06-29)
EA [auth La]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8095966 3000210 SCOP2B (2022-06-29)
HA [auth Ld]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8097818 3001045 SCOP2B (2022-06-29)
MA [auth Li]SCOP2B SuperfamilyTranslational proteins8093714 3000811 SCOP2B (2022-06-29)
GB [auth SH]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8052584 3000068 SCOP2B (2022-06-29)
HB [auth SL]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like8097826 3001397 SCOP2B (2022-06-29)
SB [auth SW]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like8052708 3002138 SCOP2B (2022-06-29)
SB [auth SW]SCOP2B SuperfamilyNucleic acid-binding proteins8052707 3000135 SCOP2B (2022-06-29)
TB [auth SX]SCOP2B SuperfamilyL30e-like8063980 3001739 SCOP2B (2022-06-29)
XB [auth Sb]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like8082683 3000100 SCOP2B (2022-06-29)
BC [auth Sf]SCOP2B SuperfamilyRibosomal protein S108097814 3001336 SCOP2B (2022-06-29)
DC [auth Sh]SCOP2B SuperfamilyRibosomal protein S88079081 3000709 SCOP2B (2022-06-29)
K [auth LF]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like8052828 3002143 SCOP2B (2022-06-29)
K [auth LF]SCOP2B SuperfamilyRibosomal protein L48052829 3001146 SCOP2B (2022-06-29)
Q [auth LL]SCOP2B SuperfamilyRibosomal protein L16p/L10e8097320 3000884 SCOP2B (2022-06-29)
R [auth LM]SCOP2B SuperfamilyRL5-like8073894 3001709 SCOP2B (2022-06-29)
JA [auth Lf]SCOP2B SuperfamilyL30e-like8094953 3001739 SCOP2B (2022-06-29)
LA [auth Lh]SCOP2B SuperfamilyRibosomal protein L32e8102090 3000982 SCOP2B (2022-06-29)
NA [auth Lj]SCOP2B SuperfamilyRibosomal protein L34e-like8103328 3002203 SCOP2B (2022-06-29)
SA [auth Lo]SCOP2B SuperfamilyRibosomal protein L39e8095597 3001756 SCOP2B (2022-06-29)
YA [auth Lx]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8065344 3001911 SCOP2B (2022-06-29)
DB [auth SE]SCOP2B SuperfamilyRibosomal protein S30e-like8053455 3002190 SCOP2B (2022-06-29)
IB [auth SM]SCOP2B SuperfamilyRibosomal S3Ae-like8053216 3002166 SCOP2B (2022-06-29)
NB [auth SR]SCOP2B SuperfamilyGS N-terminal domain-like8053171 3000408 SCOP2B (2022-06-29)
RB [auth SV]SCOP2B SuperfamilyWinged helix DNA-binding domain8055720 3000034 SCOP2B (2022-06-29)
CC [auth Sg]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain)8101986 3000068 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth E]PF03144e7zjwE2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF03144ECOD (1.6)
A [auth E]PF21131e7zjwE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF21131ECOD (1.6)
A [auth E]PF21208e7zjwE4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: PF21208ECOD (1.6)
A [auth E]PF00009e7zjwE3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
E [auth B]PF01248e7zjwB1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
I [auth LD]PF00181e7zjwLD1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
I [auth LD]PF03947e7zjwLD2 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
J [auth LE]PF00297e7zjwLE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
L [auth LG]PF14204,PF17144e7zjwLG1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF14204,PF17144ECOD (1.6)
N [auth LI]PF00327,PF08079e7zjwLI1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327,PF08079ECOD (1.6)
P [auth LK]PF00347e7zjwLK2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
U [auth LQ]PF00827e7zjwLQ1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00827ECOD (1.6)
V [auth LR]PF00572e7zjwLR1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
X [auth LT]PF17135e7zjwLT1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF17135ECOD (1.6)
Y [auth LU]PF01280e7zjwLU1 A: alpha arraysX: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) N-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) N-terminal domainF: PF01280ECOD (1.6)
Y [auth LU]PF01280e7zjwLU2 A: alpha bundlesX: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)H: Ribosomal protein L19 (L19e) C-terminal domain (From Topology)T: Ribosomal protein L19 (L19e) C-terminal domainF: PF01280ECOD (1.6)
Z [auth LV]F_UNCLASSIFIEDe7zjwLV2 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: F_UNCLASSIFIEDECOD (1.6)
Z [auth LV]PF01775e7zjwLV1 A: a+b two layersX: GP2-likeH: RplX-like (From Topology)T: RplX-likeF: PF01775ECOD (1.6)
BA [auth LX]PF01776e7zjwLX1 A: a+b two layersX: Ribosomal protein L22e (From Topology)H: Ribosomal protein L22e (From Topology)T: Ribosomal protein L22eF: PF01776ECOD (1.6)
CA [auth LY]PF00238e7zjwLY1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
EA [auth La]PF00276,PF03939e7zjwLa1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276,PF03939ECOD (1.6)
FA [auth Lb]PF16906e7zjwLb1 A: beta barrelsX: SH3H: SH3T: SH3F: PF16906ECOD (1.6)
HA [auth Ld]PF00828e7zjwLd1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
IA [auth Le]PF01779e7zjwLe1 A: extended segmentsX: RPL29 (From Topology)H: RPL29 (From Topology)T: RPL29F: PF01779ECOD (1.6)
KA [auth Lg]PF01198e7zjwLg1 A: a+b two layersX: Ribosomal protein L31e-likeH: Ribosomal protein L31e/gp120 outer domain (From Topology)T: Ribosomal protein L31e/gp120 outer domainF: PF01198ECOD (1.6)
MA [auth Li]PF01247e7zjwLi1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF01247ECOD (1.6)
OA [auth Lk]PF00831e7zjwLk1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
RA [auth Ln]PF01781e7zjwLn1 A: a+b two layersX: SRP9/14-likeH: Signal recognition particle alu RNA binding heterodimer SRP9/14-related (From Topology)T: Signal recognition particle alu RNA binding heterodimer SRP9/14-relatedF: PF01781ECOD (1.6)
TA [auth Lp]PF01020e7zjwLp1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01020ECOD (1.6)
VA [auth Lr]PF01780e7zjwLr1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01780ECOD (1.6)
XA [auth Lt]PF00466e7zjwLt1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein L10-like (From Topology)T: Ribosomal protein L10-likeF: PF00466ECOD (1.6)
GB [auth SH]PF00253e7zjwSH1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF00253ECOD (1.6)
HB [auth SL]PF00318,PF16122e7zjwSL1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Ribosomal protein S2/SIS domain (From Topology)T: Ribosomal protein S2/SIS domainF: PF00318,PF16122ECOD (1.6)
JB [auth SN]PF03719e7zjwSN1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03719ECOD (1.6)
JB [auth SN]PF00333e7zjwSN3 A: a+b two layersX: dsRBD-likeH: dsRNA-binding domain-like (From Topology)T: dsRNA-binding domain-likeF: PF00333ECOD (1.6)
JB [auth SN]PF00333e7zjwSN2 A: extended segmentsX: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)H: N-terminal region in 40S ribosomal protein rpS2 (S5p) (From Topology)T: N-terminal region in 40S ribosomal protein rpS2 (S5p)F: PF00333ECOD (1.6)
KB [auth SO]PF00189e7zjwSO2 A: a+b two layersX: T-foldH: Ribosomal protein S3-C (From Topology)T: Ribosomal protein S3-CF: PF00189ECOD (1.6)
KB [auth SO]PF07650e7zjwSO1 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: KH-domainsT: Prokaryotic type KH domain (KH-domain type II)F: PF07650ECOD (1.6)
LB [auth SP]PF00900e7zjwSP1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00900ECOD (1.6)
LB [auth SP]PF00467,PF16121e7zjwSP3 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF16121ECOD (1.6)
LB [auth SP]PF00900,PF01479,PF08071e7zjwSP2 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00900,PF01479,PF08071ECOD (1.6)
QB [auth SU]PF00163,PF01479e7zjwSU1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Alpha-L RNA-binding motifF: PF00163,PF01479ECOD (1.6)
SB [auth SW]PF00366,PF16205e7zjwSW1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00366,PF16205ECOD (1.6)
TB [auth SX]PF01248e7zjwSX1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
VB [auth SZ]PF00411e7zjwSZ1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00411ECOD (1.6)
XB [auth Sb]PF00380e7zjwSb1 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF00380ECOD (1.6)
ZB [auth Sd]PF00416e7zjwSd1 A: alpha arraysX: HhH/H2THH: H2TH (From Topology)T: H2THF: PF00416ECOD (1.6)
BC [auth Sf]PF00338e7zjwSf1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal protein S10 (From Topology)T: Ribosomal protein S10F: PF00338ECOD (1.6)
DC [auth Sh]PF00410e7zjwSh1 A: a+b two layersX: R3H domain-likeH: Ribosomal protein S8, N-terminal domain (From Topology)T: Ribosomal protein S8, N-terminal domainF: PF00410ECOD (1.6)
DC [auth Sh]PF00410e7zjwSh2 A: a+b two layersX: Ribosomal protein S8, C-terminal domain (From Topology)H: Ribosomal protein S8, C-terminal domain (From Topology)T: Ribosomal protein S8, C-terminal domainF: PF00410ECOD (1.6)
HC [auth Sl]PF05162e7zjwSl1 A: extended segmentsX: Ribosomal protein L41-A (From Topology)H: Ribosomal protein L41-A (From Topology)T: Ribosomal protein L41-AF: PF05162ECOD (1.6)
K [auth LF]PF00573e7zjwLF1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
K [auth LF]PF14374e7zjwLF2 A: extended segmentsX: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)H: C-terminal helical region in 60S ribosomal protein L4 (L4p) (From Topology)T: C-terminal helical region in 60S ribosomal protein L4 (L4p)F: PF14374ECOD (1.6)
M [auth LH]PF01159,PF03868e7zjwLH1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01159,PF03868ECOD (1.6)
O [auth LJ]PF01248e7zjwLJ1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
Q [auth LL]PF00252e7zjwLL1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
R [auth LM]PF00281,PF00673e7zjwLM1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)
S [auth LO]PF01294e7zjwLO1 A: extended segmentsX: RPL13 (From Topology)H: RPL13 (From Topology)T: RPL13F: PF01294ECOD (1.6)
T [auth LP]PF00467,PF01929e7zjwLP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01929ECOD (1.6)
W [auth LS]PF00237e7zjwLS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
AA [auth LW]PF01157e7zjwLW1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01157ECOD (1.6)
DA [auth LZ]PF01246e7zjwLZ1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01246ECOD (1.6)
GA [auth Lc]PF00467,PF01777e7zjwLc1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF01777ECOD (1.6)
JA [auth Lf]PF01248e7zjwLf1 A: a+b three layersX: Bacillus chorismate mutase-likeH: L30e-like (From Topology)T: L30e-likeF: PF01248ECOD (1.6)
LA [auth Lh]PF01655e7zjwLh1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L32e (From Topology)T: Ribosomal protein L32eF: PF01655ECOD (1.6)
NA [auth Lj]PF01199e7zjwLj1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: RPL34 (From Topology)T: RPL34F: PF01199ECOD (1.6)
PA [auth Ll]PF01158e7zjwLl1 A: alpha arraysX: 60S ribosomal protein rpL36 (L36e) (From Topology)H: 60S ribosomal protein rpL36 (L36e) (From Topology)T: 60S ribosomal protein rpL36 (L36e)F: PF01158ECOD (1.6)
QA [auth Lm]PF01907e7zjwLm1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01907ECOD (1.6)
SA [auth Lo]PF00832e7zjwLo1 A: extended segmentsX: Ribosomal protein L39e (From Topology)H: Ribosomal protein L39e (From Topology)T: Ribosomal protein L39eF: PF00832ECOD (1.6)
UA [auth Lq]PF00935e7zjwLq1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00935ECOD (1.6)
WA [auth Ls]PF01778e7zjwLs1 A: a+b two layersX: RPL28 (From Topology)H: RPL28 (From Topology)T: RPL28F: PF01778ECOD (1.6)
YA [auth Lx]PF00687e7zjwLx1 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
YA [auth Lx]PF00687e7zjwLx2 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
AB [auth SB]PF01667e7zjwSB1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01667ECOD (1.6)
BB [auth SC]PF01200e7zjwSC1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF01200ECOD (1.6)
CB [auth SD]PF01599e7zjwSD1 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01599ECOD (1.6)
DB [auth SE]PF04758e7zjwSE1 A: extended segmentsX: 40S ribosomal protein S30 (S30e) (From Topology)H: 40S ribosomal protein S30 (S30e) (From Topology)T: 40S ribosomal protein S30 (S30e)F: PF04758ECOD (1.6)
EB [auth SF]PF01283e7zjwSF1 A: few secondary structure elementsX: Glucocorticoid receptor-likeH: LIM domain-likeT: LIM domain-likeF: PF01283ECOD (1.6)
FB [auth SG]PF00400e7zjwSG1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: PF00400ECOD (1.6)
IB [auth SM]PF01015e7zjwSM2 A: beta barrelsX: Ribosomal protein L25-likeH: 40S ribosomal protein S3A N-terminal domain (From Topology)T: 40S ribosomal protein S3A N-terminal domainF: PF01015ECOD (1.6)
IB [auth SM]PF01015e7zjwSM1 A: a+b two layersX: T-foldH: 40S ribosomal protein S3A C-terminal domain (From Topology)T: 40S ribosomal protein S3A C-terminal domainF: PF01015ECOD (1.6)
MB [auth SQ]PF00177e7zjwSQ1 A: alpha arraysX: Ribosomal protein S7 (From Topology)H: Ribosomal protein S7 (From Topology)T: Ribosomal protein S7F: PF00177ECOD (1.6)
NB [auth SR]PF01092e7zjwSR1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01092ECOD (1.6)
OB [auth SS]PF01251e7zjwSS2 A: a+b two layersX: Alpha-lytic protease prodomain-likeH: 40S ribosomal protein S7-A (From Topology)T: 40S ribosomal protein S7-AF: PF01251ECOD (1.6)
PB [auth ST]PF01201e7zjwST1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF01201ECOD (1.6)
RB [auth SV]PF03501e7zjwSV1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03501ECOD (1.6)
UB [auth SY]PF08069e7zjwSY1 A: alpha arraysX: HTHH: 40S ribosomal protein S13 N-terminal domain (From Topology)T: 40S ribosomal protein S13 N-terminal domainF: PF08069ECOD (1.6)
UB [auth SY]PF00312e7zjwSY2 A: alpha arraysX: S15/NS1 RNA-binding domain (From Topology)H: S15/NS1 RNA-binding domain (From Topology)T: S15/NS1 RNA-binding domainF: PF00312ECOD (1.6)
WB [auth Sa]PF00203e7zjwSa1 A: a+b two layersX: Ribosomal protein S19 (From Topology)H: Ribosomal protein S19 (From Topology)T: Ribosomal protein S19F: PF00203ECOD (1.6)
YB [auth Sc]PF00833e7zjwSc1 A: alpha arraysX: HTHH: HTHT: FF domainF: PF00833ECOD (1.6)
AC [auth Se]PF01090e7zjwSe1 A: alpha arraysX: HTHH: HTHT: wingedF: PF01090ECOD (1.6)
CC [auth Sg]PF01249e7zjwSg1 A: a+b two layersX: 40S ribosomal protein rpS21 (S21e) (From Topology)H: 40S ribosomal protein rpS21 (S21e) (From Topology)T: 40S ribosomal protein rpS21 (S21e)F: PF01249ECOD (1.6)
EC [auth Si]PF00164e7zjwSi1 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00164ECOD (1.6)
FC [auth Sj]PF01282e7zjwSj1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF01282ECOD (1.6)
GC [auth Sk]PF03297e7zjwSk1 A: alpha arraysX: HTHH: HTHT: wingedF: PF03297ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth E]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
A [auth E]PF21131eEFSec C-terminal RIFT domain (eEFSec_4th)eEFSec C-terminal RIFT domainThis entry represents the C-terminal RIFT beta barrel domain found in the Selenocysteine-specific elongation factor eEFSec [1]. Selenocysteine is the only proteinogenic amino acid encoded by a recoded in-frame UGA codon that does not operate as the c ...This entry represents the C-terminal RIFT beta barrel domain found in the Selenocysteine-specific elongation factor eEFSec [1]. Selenocysteine is the only proteinogenic amino acid encoded by a recoded in-frame UGA codon that does not operate as the canonical opal stop codon. A specialised translation elongation factor, eEFSec in eukaryotes and SelB in prokaryotes, promotes selenocysteine incorporation into selenoproteins [1].
Domain
A [auth E]PF21208Selenocysteine-specific elongation factor, eukaryotes, 3rd domain (euk_SelB_III)Selenocysteine-specific elongation factor, eukaryotes, 3rd domainThis domain is found in Selenocysteine-specific elongation factor from humans (SelB) and similar sequences from eukaryotes. SelB is a translation factor necessary for the incorporation of selenocysteine into proteins. This protein adopts a chalice-li ...This domain is found in Selenocysteine-specific elongation factor from humans (SelB) and similar sequences from eukaryotes. SelB is a translation factor necessary for the incorporation of selenocysteine into proteins. This protein adopts a chalice-like structure composed of four domains. This entry represents the third domain, which shows seven antiparallel beta-strands and a long alpha-helix [1].
Domain
A [auth E]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
E [auth B]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
I [auth LD]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
I [auth LD]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
J [auth LE]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
L [auth LG]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
L [auth LG]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins.Domain
N [auth LI]PF08079Ribosomal L30 N-terminal domain (Ribosomal_L30_N)Ribosomal L30 N-terminal domainThis presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018 [1].Domain
N [auth LI]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
P [auth LK]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
U [auth LQ]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
V [auth LR]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
X [auth LT]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
Y [auth LU]PF01280Ribosomal protein L19e (Ribosomal_L19e)Ribosomal protein L19e- Family
Z [auth LV]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.Domain
BA [auth LX]PF01776Ribosomal L22e protein family (Ribosomal_L22e)Ribosomal L22e protein family- Family
CA [auth LY]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
EA [auth La]PF03939Ribosomal protein L23, N-terminal domain (Ribosomal_L23eN)Ribosomal protein L23, N-terminal domain- Family
EA [auth La]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
FA [auth Lb]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
FA [auth Lb]PF00467KOW motif (KOW)KOW motif- Family
HA [auth Ld]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
IA [auth Le]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
KA [auth Lg]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
MA [auth Li]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35Ae- Domain
OA [auth Lk]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
RA [auth Ln]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein family- Family
TA [auth Lp]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e family- Family
VA [auth Lr]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
GB [auth SH]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
HB [auth SL]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
HB [auth SL]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
JB [auth SN]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
JB [auth SN]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
KB [auth SO]PF07650KH domain (KH_2)KH domain- Domain
KB [auth SO]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
LB [auth SP]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
LB [auth SP]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
LB [auth SP]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
LB [auth SP]PF00467KOW motif (KOW)KOW motif- Family
QB [auth SU]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
QB [auth SU]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
SB [auth SW]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
SB [auth SW]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
TB [auth SX]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
VB [auth SZ]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
XB [auth Sb]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
ZB [auth Sd]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
BC [auth Sf]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
DC [auth Sh]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
HC [auth Sl]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
K [auth LF]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins.Domain
K [auth LF]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
M [auth LH]PF03868Ribosomal protein L6, N-terminal domain (Ribosomal_L6e_N)Ribosomal protein L6, N-terminal domain- Domain
M [auth LH]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
O [auth LJ]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
Q [auth LL]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
R [auth LM]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
R [auth LM]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain
S [auth LO]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
T [auth LP]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
W [auth LS]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
AA [auth LW]PF01157Ribosomal protein L21e (Ribosomal_L21e)Ribosomal protein L21e- Family
GA [auth Lc]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein family- Family
GA [auth Lc]PF00467KOW motif (KOW)KOW motif- Family
JA [auth Lf]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
LA [auth Lh]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
NA [auth Lj]PF01199Ribosomal protein L34e (Ribosomal_L34e)Ribosomal protein L34e- Family
PA [auth Ll]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
QA [auth Lm]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
SA [auth Lo]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
UA [auth Lq]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
WA [auth Ls]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
YA [auth Lx]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
AB [auth SB]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
BB [auth SC]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
CB [auth SD]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
DB [auth SE]PF04758Ribosomal protein S30 (Ribosomal_S30)Ribosomal protein S30- Family
EB [auth SF]PF01283Ribosomal protein S26e (Ribosomal_S26e)Ribosomal protein S26e- Family
FB [auth SG]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
MB [auth SQ]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
NB [auth SR]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
OB [auth SS]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
PB [auth ST]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
RB [auth SV]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
UB [auth SY]PF08069Ribosomal S13/S15 N-terminal domain (Ribosomal_S13_N)Ribosomal S13/S15 N-terminal domainThis domain is found at the N-terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [1].Domain
UB [auth SY]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
WB [auth Sa]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
YB [auth Sc]PF00833Ribosomal S17 (Ribosomal_S17e)Ribosomal S17- Family
AC [auth Se]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
CC [auth Sg]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
EC [auth Si]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
FC [auth Sj]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
GC [auth Sk]PF03297S25 ribosomal protein (Ribosomal_S25)S25 ribosomal protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth E]eEFSec
B [auth F]human Ser-tRNA-Sec---
D [auth S]GPX4 SECIS element---
E [auth B]SECIS Binding Protein 2
H [auth L8]5.8S rRNA---
I [auth LD]60S ribosomal protein uL2
J [auth LE]60S ribosomal protein L3- - -
L [auth LG]Ribosomal_L18_c domain-containing protein---
N [auth LI]60S ribosomal Protein uL30
P [auth LK]60S ribosomal protein L9- - -
U [auth LQ]60S ribosomal protein L15- - -
V [auth LR]60S ribosomal protein uL13
X [auth LT]60S ribosomal Protein eL18
Y [auth LU]60S ribosomal protein L19
Z [auth LV]60S ribosomal protein eL20
BA [auth LX]60S ribosomal protein eL22
CA [auth LY]60S ribosomal protein L23
EA [auth La]60S ribosomal protein uL23- - -
FA [auth Lb]60S ribosomal protein L26
HA [auth Ld]60S ribosomal protein L27a- - -
IA [auth Le]60S ribosomal protein L29- - -
KA [auth Lg]60S ribosomal protein eL31- - -
MA [auth Li]60S ribosomal protein eL33- - -
OA [auth Lk]60S ribosomal protein uL29- - -
RA [auth Ln]60S ribosomal protein eL38
TA [auth Lp]60S ribosomal protein L40
VA [auth Lr]60S ribosomal protein eL43
XA [auth Lt]60S ribosomal protein P0- - -
ZA [auth S2]18S rRNA---
GB [auth SH]40S ribosomal protein uS14- - -
HB [auth SL]40S ribosomal protein SA- - -
JB [auth SN]40S ribosomal protein uS5
KB [auth SO]40S ribosomal protein S3- - -
LB [auth SP]40S ribosomal protein eS4
QB [auth SU]40S ribosomal protein S9- - -
SB [auth SW]40S ribosomal protein S11- - -
TB [auth SX]40S ribosomal protein S12- - -
VB [auth SZ]40S ribosomal protein uS11
XB [auth Sb]40S ribosomal protein uS9- - -
ZB [auth Sd]40S ribosomal protein S18
BC [auth Sf]40S ribosomal protein uS10- - -
DC [auth Sh]40S ribosomal protein S15a- - -
HC [auth Sl]60S ribosomal protein L41- - -
K [auth LF]60S ribosomal protein L4- - -
M [auth LH]60S ribosomal protein L6- - -
O [auth LJ]60S ribosomal protein eL8
Q [auth LL]60S ribosomal protein L10- - -
R [auth LM]60S ribosomal protein L11- - -
S [auth LO]60S ribosomal protein eL13- - -
T [auth LP]60S ribosomal protein L14- - -
W [auth LS]60S ribosomal protein uL22
AA [auth LW]60S ribosomal protein eL21- - -
C [auth I]CrPV IRES---
DA [auth LZ]60S ribosomal protein eL24- - -
GA [auth Lc]60S ribosomal protein L27
JA [auth Lf]60S ribosomal protein eL30- - -
LA [auth Lh]60S ribosomal protein eL32- - -
NA [auth Lj]60S ribosomal protein L34- - -
PA [auth Ll]60S ribosomal protein L36
QA [auth Lm]60S ribosomal protein L37- - -
SA [auth Lo]60S ribosomal protein eL39
UA [auth Lq]60S ribosomal protein eL42
WA [auth Ls]60S ribosomal protein eL28
YA [auth Lx]60S ribosomal protein uL1- - -
AB [auth SB]40S ribosomal protein S27
BB [auth SC]40S ribosomal protein S28
CB [auth SD]40S ribosomal protein S27a
DB [auth SE]40S ribosomal protein S30- - -
EB [auth SF]Ribosomal protein eS26
FB [auth SG]RACK1
F [auth L5]28S rRNA---
IB [auth SM]40S ribosomal protein S3a- - -
MB [auth SQ]Ribosomal protein S5
NB [auth SR]40S ribosomal protein S6
OB [auth SS]40S ribosomal protein S7- - -
PB [auth ST]40S ribosomal protein S8
G [auth L7]5S rRNA---
RB [auth SV]40S ribosomal protein eS10- - -
UB [auth SY]40S ribosomal protein uS15
WB [auth Sa]40S ribosomal protein uS19- - -
YB [auth Sc]40S ribosomal protein eS17- - -
AC [auth Se]40S Ribosomal protein eS19
CC [auth Sg]40S ribosomal protein eS21
EC [auth Si]40S ribosomal protein S23- - -
FC [auth Sj]40S ribosomal protein S24
GC [auth Sk]40S ribosomal protein S25- -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth E]IPR049393Selenocysteine-specific elongation factor, 3rd domainDomain
A [auth E]IPR000795Translational (tr)-type GTP-binding domainDomain
A [auth E]IPR049394Selenocysteine-specific elongation factor, C-terminal RIFT domainDomain
A [auth E]IPR004161Translation elongation factor EFTu-like, domain 2Domain
A [auth E]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
A [auth E]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
E [auth B]IPR040051Selenocysteine insertion sequence-binding protein 2Family
E [auth B]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
E [auth B]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
I [auth LD]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
I [auth LD]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
I [auth LD]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
I [auth LD]IPR023672Large ribosomal subunit protein uL2, archaeal-typeFamily
I [auth LD]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
I [auth LD]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth LD]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
I [auth LD]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
I [auth LD]IPR002171Large ribosomal subunit protein uL2Family
N [auth LI]IPR035808Large ribosomal subunit protein uL30, eukaryotic/archaealDomain
N [auth LI]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotesDomain
N [auth LI]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
N [auth LI]IPR039699Large ribosomal subunit protein uL30Family
N [auth LI]IPR005998Large ribosomal subunit protein uL30, eukaryoticFamily
N [auth LI]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
N [auth LI]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
V [auth LR]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
V [auth LR]IPR005822Large ribosomal subunit protein uL13Family
V [auth LR]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
V [auth LR]IPR005755Large ribosomal subunit protein uL13, eukaryotic/archaealFamily
X [auth LT]IPR021131Large ribosomal subunit protein uL15/eL18Domain
X [auth LT]IPR021132Large ribosomal subunit protein eL18, conserved siteConserved Site
X [auth LT]IPR000039Large ribosomal subunit protein eL18Family
X [auth LT]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
Y [auth LU]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
Y [auth LU]IPR039547Large ribosomal subunit protein eL19Family
Y [auth LU]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
Y [auth LU]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
Y [auth LU]IPR000196Large ribosomal subunit protein eL19 domainDomain
Y [auth LU]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
Z [auth LV]IPR028877Large ribosomal subunit protein eL20Family
Z [auth LV]IPR023573Large ribosomal subunit protein eL20 domainDomain
Z [auth LV]IPR021138Large ribosomal subunit protein eL20, eukaryotesFamily
BA [auth LX]IPR002671Large ribosomal subunit protein eL22Family
BA [auth LX]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
CA [auth LY]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
CA [auth LY]IPR000218Large ribosomal subunit protein uL14Family
CA [auth LY]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
FA [auth Lb]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
FA [auth Lb]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
FA [auth Lb]IPR005824KOWDomain
FA [auth Lb]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
FA [auth Lb]IPR005756Large ribosomal subunit protein uL24, eukaryotic/archaealFamily
FA [auth Lb]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
RA [auth Ln]IPR002675Large ribosomal subunit protein eL38Family
RA [auth Ln]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
TA [auth Lp]IPR019956Ubiquitin domainDomain
TA [auth Lp]IPR019954Ubiquitin conserved siteConserved Site
TA [auth Lp]IPR001975Large ribosomal subunit protein eL40 domainDomain
TA [auth Lp]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
TA [auth Lp]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
TA [auth Lp]IPR000626Ubiquitin-like domainDomain
VA [auth Lr]IPR002674Large ribosomal subunit protein eL43Family
VA [auth Lr]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
VA [auth Lr]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
JB [auth SN]IPR000851Small ribosomal subunit protein uS5Family
JB [auth SN]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
JB [auth SN]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
JB [auth SN]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
JB [auth SN]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
JB [auth SN]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
JB [auth SN]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
LB [auth SP]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
LB [auth SP]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
LB [auth SP]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
LB [auth SP]IPR002942RNA-binding S4 domainDomain
LB [auth SP]IPR013845Small ribosomal subunit protein eS4, central regionDomain
LB [auth SP]IPR000876Small ribosomal subunit protein eS4Family
LB [auth SP]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
LB [auth SP]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
LB [auth SP]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
LB [auth SP]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
LB [auth SP]IPR005824KOWDomain
VB [auth SZ]IPR001971Small ribosomal subunit protein uS11Family
VB [auth SZ]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
VB [auth SZ]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
ZB [auth Sd]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
ZB [auth Sd]IPR001892Small ribosomal subunit protein uS13Family
ZB [auth Sd]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
ZB [auth Sd]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
O [auth LJ]IPR001921Large ribosomal subunit protein eL8Family
O [auth LJ]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
O [auth LJ]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
O [auth LJ]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
O [auth LJ]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
W [auth LS]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
W [auth LS]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
W [auth LS]IPR001063Large ribosomal subunit protein uL22Family
W [auth LS]IPR005721Large ribosomal subunit protein uL22, eukaryotic/archaealFamily
GA [auth Lc]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
GA [auth Lc]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
GA [auth Lc]IPR005824KOWDomain
GA [auth Lc]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
GA [auth Lc]IPR001141Large ribosomal subunit protein eL27Family
GA [auth Lc]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
PA [auth Ll]IPR000509Large ribosomal subunit protein eL36Family
PA [auth Ll]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
SA [auth Lo]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
SA [auth Lo]IPR000077Large ribosomal subunit protein eL39Family
SA [auth Lo]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
UA [auth Lq]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
UA [auth Lq]IPR000552Large ribosomal subunit protein eL42Family
WA [auth Ls]IPR029004Ribosomal eL28/Mak16Domain
WA [auth Ls]IPR002672Large ribosomal subunit protein eL28Family
AB [auth SB]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
AB [auth SB]IPR000592Small ribosomal subunit protein eS27Family
AB [auth SB]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BB [auth SC]IPR028626Ribosomal protein eS28 conserved siteConserved Site
BB [auth SC]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
BB [auth SC]IPR000289Small ribosomal subunit protein eS28Family
CB [auth SD]IPR019954Ubiquitin conserved siteConserved Site
CB [auth SD]IPR000626Ubiquitin-like domainDomain
CB [auth SD]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
CB [auth SD]IPR002906Small ribosomal subunit protein eS31Domain
CB [auth SD]IPR019956Ubiquitin domainDomain
CB [auth SD]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
CB [auth SD]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EB [auth SF]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
EB [auth SF]IPR000892Small ribosomal subunit protein eS26Family
EB [auth SF]IPR047864Ribosomal protein eS26, conserved siteConserved Site
FB [auth SG]IPR045223Small ribosomal subunit protein RACK1-likeFamily
FB [auth SG]IPR001680WD40 repeatRepeat
FB [auth SG]IPR019775WD40 repeat, conserved siteConserved Site
FB [auth SG]IPR020472G-protein beta WD-40 repeatRepeat
FB [auth SG]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
FB [auth SG]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
MB [auth SQ]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
MB [auth SQ]IPR000235Small ribosomal subunit protein uS7Family
MB [auth SQ]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
MB [auth SQ]IPR023798Small ribosomal subunit protein uS7 domainDomain
MB [auth SQ]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
NB [auth SR]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
NB [auth SR]IPR001377Small ribosomal subunit protein eS6Family
NB [auth SR]IPR014401Small ribosomal subunit protein eS6-likeFamily
PB [auth ST]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
PB [auth ST]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
PB [auth ST]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
PB [auth ST]IPR001047Small ribosomal subunit protein eS8Family
RB [auth SV]IPR037447Small ribosomal subunit protein eS10Family
RB [auth SV]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
RB [auth SV]IPR005326Plectin/eS10, N-terminalDomain
UB [auth SY]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
UB [auth SY]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
UB [auth SY]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
UB [auth SY]IPR000589Small ribosomal subunit protein uS15Family
AC [auth Se]IPR001266Small ribosomal subunit protein eS19Family
AC [auth Se]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
AC [auth Se]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
AC [auth Se]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
CC [auth Sg]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
CC [auth Sg]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
CC [auth Sg]IPR001931Small ribosomal subunit protein eS21Family
FC [auth Sj]IPR001976Small ribosomal subunit protein eS24Family
FC [auth Sj]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
FC [auth Sj]IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
GC [auth Sk]IPR004977Small ribosomal subunit protein eS25Family
GC [auth Sk]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
H [auth L8]OMG Parent Component: G

H [auth L8]PSU Parent Component: U

J [auth LE]HIC Parent Component: HIS

RESIDAA0317

PSI-MOD :  1'-methyl-L-histidine MOD:00322
L [auth LG]AAC RESIDAA0317

IA [auth Le]MLZ Parent Component: LYS

RESIDAA0317 , AA0076

PSI-MOD :  1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085
TA [auth Lp]M3L Parent Component: LYS

RESIDAA0317 , AA0076 , AA0074

PSI-MOD :  1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 , N6,N6,N6-trimethyl-L-lysine MOD:00083
ZA [auth S2]4AC RESIDAA0317 , AA0076 , AA0074

ZA [auth S2]6MZ Parent Component: A

RESIDAA0317 , AA0076 , AA0074

ZA [auth S2]7MG Parent Component: G

RESIDAA0317 , AA0076 , AA0074

ZA [auth S2]A2M Parent Component: A

RESIDAA0317 , AA0076 , AA0074

ZA [auth S2]MA6 Parent Component: A

RESIDAA0317 , AA0076 , AA0074

ZA [auth S2]OMC Parent Component: C

RESIDAA0317 , AA0076 , AA0074

ZA [auth S2]OMG Parent Component: G

RESIDAA0317 , AA0076 , AA0074

ZA [auth S2]OMU Parent Component: U

RESIDAA0317 , AA0076 , AA0074

ZA [auth S2]PSU Parent Component: U

RESIDAA0317 , AA0076 , AA0074

HB [auth SL]SAC Parent Component: SER

RESIDAA0317 , AA0076 , AA0074

ZB [auth Sd]SAC Parent Component: SER

RESIDAA0317 , AA0076 , AA0074

K [auth LF]AYA Parent Component: ALA

RESIDAA0317 , AA0076 , AA0074

UA [auth Lq]MLZ Parent Component: LYS

RESIDAA0317 , AA0076 , AA0074 , AA0076

PSI-MOD :  1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , N6-methyl-L-lysine MOD:00085
WA [auth Ls]SAC Parent Component: SER

RESIDAA0317 , AA0076 , AA0074 , AA0076

F [auth L5]1MA Parent Component: A

RESIDAA0317 , AA0076 , AA0074 , AA0076

F [auth L5]5MC Parent Component: C

RESIDAA0317 , AA0076 , AA0074 , AA0076

F [auth L5]6MZ Parent Component: A

RESIDAA0317 , AA0076 , AA0074 , AA0076

F [auth L5]A2M Parent Component: A

RESIDAA0317 , AA0076 , AA0074 , AA0076

F [auth L5]OMC Parent Component: C

RESIDAA0317 , AA0076 , AA0074 , AA0076

F [auth L5]OMG Parent Component: G

RESIDAA0317 , AA0076 , AA0074 , AA0076

F [auth L5]OMU Parent Component: U

RESIDAA0317 , AA0076 , AA0074 , AA0076

F [auth L5]PSU Parent Component: U

RESIDAA0317 , AA0076 , AA0074 , AA0076

F [auth L5]UR3 Parent Component: U

RESIDAA0317 , AA0076 , AA0074 , AA0076

AC [auth Se]NMM Parent Component: ARG

RESIDAA0317 , AA0076 , AA0074 , AA0076

CC [auth Sg]AME Parent Component: MET

RESIDAA0317 , AA0076 , AA0074 , AA0076

EC [auth Si]HY3 Parent Component: PRO

RESIDAA0317 , AA0076 , AA0074 , AA0076 , AA0029

PSI-MOD :  1'-methyl-L-histidine MOD:00322 , N6-methyl-L-lysine MOD:00085 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , N6-methyl-L-lysine MOD:00085 , 3-hydroxy-L-proline MOD:00038