Annotations: 7ZIR

Cryo-EM structure of hnRNPDL amyloid fibrils

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth B]	Ribosomal_L27A, Ribosomal_L18	e7zirB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
D	Ribosomal_L27A, Ribosomal_L18	e7zirD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
C [auth E]	Ribosomal_L27A, Ribosomal_L18	e7zirE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
B [auth A]	Ribosomal_L27A, Ribosomal_L18	e7zirA1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L27A, Ribosomal_L18	ECOD (v295)
A [auth C]	Proton_antipo_M,Proton_antipo_N	e7zirC01	A: alpha arrays	X: Fe-binding domain in prismane-like proteins	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: Proton_antipo_M,Proton_antipo_N	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth C], B [auth A], C [auth E], D, E [auth B]	Heterogeneous nuclear ribonucleoprotein D-like	DNA binding binding nucleic acid binding double-stranded DNA binding RNA binding poly(A) binding poly-purine tract binding single-stranded RNA binding poly(G) binding single-stranded DNA binding	regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process RNA processing DNA-templated transcription	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex cytoplasm cytosol membrane-enclosed lumen membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure spliceosomal complex organelle ribonucleoprotein complex cytoplasm cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth C], B [auth A], C [auth E], D, E [auth B]	IPR000504	RNA recognition motif domain	Domain
A [auth C], B [auth A], C [auth E], D, E [auth B]	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A [auth C], B [auth A], C [auth E], D, E [auth B]	IPR034847	hnRNP DL, RNA recognition motif 1	Domain
A [auth C], B [auth A], C [auth E], D, E [auth B]	IPR035979	RNA-binding domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth C], B [auth A], C [auth E], D, E [auth B]	: O14979	limb-girdle muscular dystrophy autosomal dominant limb-girdle muscular dystrophy type 1G ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma astrocytic tumor breast cancer glioblastoma lung cancer malignant glioma medulloblastoma Pick disease primitive neuroectodermal tumor tuberculosis atypical teratoid rhabdoid tumor limb-girdle muscular dystrophy autosomal dominant limb-girdle muscular dystrophy type 1G ovarian cancer plasma cell myeloma subependymal giant cell astrocytoma astrocytic tumor breast cancer glioblastoma lung cancer malignant glioma medulloblastoma Pick disease primitive neuroectodermal tumor tuberculosis atypical teratoid rhabdoid tumor dermatomyositis interstitial lung disease LIMB-GIRDLE MUSCULAR DYSTROPHY, TYPE 1G (disorder) lymphoplasmacytic lymphoma malignant mesothelioma non-small cell lung carcinoma pilocytic astrocytoma progressive supranuclear palsy exocrine pancreatic carcinoma large cell medulloblastoma lung adenocarcinoma malignant ependymoma malignant pancreatic neoplasm

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7ZIR | pdb_00007zir

Cryo-EM structure of hnRNPDL amyloid fibrils

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation