7Z42
Influenza B polymerase with Pol II pSer5 CTD peptide mimic bound in site 2B
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF00603 | e7z42A1 | A: a+b complex topology | X: Polymerase acidic protein (From Topology) | H: Polymerase acidic protein (From Topology) | T: Polymerase acidic protein | F: PF00603 | ECOD (1.6) |
A | PF00603 | e7z42A2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF00603 | ECOD (1.6) |
D | PF00603 | e7z42D1 | A: a+b complex topology | X: Polymerase acidic protein (From Topology) | H: Polymerase acidic protein (From Topology) | T: Polymerase acidic protein | F: PF00603 | ECOD (1.6) |
D | PF00603 | e7z42D2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: PF00603 | ECOD (1.6) |
B | PF00602 | e7z42B3 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: PF00602 | ECOD (1.6) |
B | PF00602 | e7z42B1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00602 | ECOD (1.6) |
B | PF00602 | e7z42B2 | A: extended segments | X: RNA polymerase PB1 C-terminal fragment (From Topology) | H: RNA polymerase PB1 C-terminal fragment (From Topology) | T: RNA polymerase PB1 C-terminal fragment | F: PF00602 | ECOD (1.6) |
E | PF00602 | e7z42E3 | A: alpha bundles | X: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | H: helical bundle domain in reverse transcriptase-like polymerases (From Topology) | T: helical bundle domain in reverse transcriptase-like polymerases | F: PF00602 | ECOD (1.6) |
E | PF00602 | e7z42E1 | A: a+b two layers | X: Alpha-beta plaits | H: Adenylyl and guanylyl cyclase catalytic domain-like | T: Adenylyl and guanylyl cyclase catalytic domain-like | F: PF00602 | ECOD (1.6) |
E | PF00602 | e7z42E2 | A: extended segments | X: RNA polymerase PB1 C-terminal fragment (From Topology) | H: RNA polymerase PB1 C-terminal fragment (From Topology) | T: RNA polymerase PB1 C-terminal fragment | F: PF00602 | ECOD (1.6) |
C | PF00604,PF20951 | e7z42C1 | A: alpha arrays | X: PB2 '627' domain-related (From Homology) | H: PB2 '627' domain-related | T: Polymerase basic protein 2 (PB2) '627' domain | F: PF00604,PF20951 | ECOD (1.6) |
C | PF20950 | e7z42C6 | A: alpha arrays | X: Helical domain in PB2 (From Topology) | H: Helical domain in PB2 (From Topology) | T: Helical domain in PB2 | F: PF20950 | ECOD (1.6) |
C | PF20952 | e7z42C2 | A: a+b two layers | X: PB2 C-terminal domain-like (From Topology) | H: PB2 C-terminal domain-like (From Topology) | T: PB2 C-terminal domain-like | F: PF20952 | ECOD (1.6) |
C | PF20948 | e7z42C5 | A: a+b two layers | X: a+b domain in PB2 (From Topology) | H: a+b domain in PB2 (From Topology) | T: a+b domain in PB2 | F: PF20948 | ECOD (1.6) |
C | PF00604 | e7z42C4 | A: a+b three layers | X: Polymerase basic protein 2 cap-binding domain (From Topology) | H: Polymerase basic protein 2 cap-binding domain (From Topology) | T: Polymerase basic protein 2 cap-binding domain | F: PF00604 | ECOD (1.6) |
C | PF20949 | e7z42C3 | A: a+b complex topology | X: Middle domain in PB2 (From Topology) | H: Middle domain in PB2 (From Topology) | T: Middle domain in PB2 | F: PF20949 | ECOD (1.6) |
C | PF20947 | e7z42C7 | A: extended segments | X: RNA polymerase PB2 N-terminal fragment (From Topology) | H: RNA polymerase PB2 N-terminal fragment (From Topology) | T: RNA polymerase PB2 N-terminal fragment | F: PF20947 | ECOD (1.6) |
F | PF00604,PF20951 | e7z42F6 | A: alpha arrays | X: PB2 '627' domain-related (From Homology) | H: PB2 '627' domain-related | T: Polymerase basic protein 2 (PB2) '627' domain | F: PF00604,PF20951 | ECOD (1.6) |
F | PF20950 | e7z42F1 | A: alpha arrays | X: Helical domain in PB2 (From Topology) | H: Helical domain in PB2 (From Topology) | T: Helical domain in PB2 | F: PF20950 | ECOD (1.6) |
F | PF20952 | e7z42F3 | A: a+b two layers | X: PB2 C-terminal domain-like (From Topology) | H: PB2 C-terminal domain-like (From Topology) | T: PB2 C-terminal domain-like | F: PF20952 | ECOD (1.6) |
F | PF20948 | e7z42F7 | A: a+b two layers | X: a+b domain in PB2 (From Topology) | H: a+b domain in PB2 (From Topology) | T: a+b domain in PB2 | F: PF20948 | ECOD (1.6) |
F | PF00604 | e7z42F4 | A: a+b three layers | X: Polymerase basic protein 2 cap-binding domain (From Topology) | H: Polymerase basic protein 2 cap-binding domain (From Topology) | T: Polymerase basic protein 2 cap-binding domain | F: PF00604 | ECOD (1.6) |
F | PF20949 | e7z42F2 | A: a+b complex topology | X: Middle domain in PB2 (From Topology) | H: Middle domain in PB2 (From Topology) | T: Middle domain in PB2 | F: PF20949 | ECOD (1.6) |
F | PF20947 | e7z42F5 | A: extended segments | X: RNA polymerase PB2 N-terminal fragment (From Topology) | H: RNA polymerase PB2 N-terminal fragment (From Topology) | T: RNA polymerase PB2 N-terminal fragment | F: PF20947 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00603 | Influenza RNA-dependent RNA polymerase subunit PA (Flu_PA) | Influenza RNA-dependent RNA polymerase subunit PA | - | Family | |
PF00602 | Influenza RNA-dependent RNA polymerase subunit PB1 (Flu_PB1) | Influenza RNA-dependent RNA polymerase subunit PB1 | - | Family | |
PF20948 | Influenza RNA polymerase PB2 second domain (Flu_PB2_2nd) | Influenza RNA polymerase PB2 second domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain | |
PF00604 | Influenza RNA polymerase PB2 CAP binding domain (Flu_PB2_5th) | Influenza RNA polymerase PB2 CAP binding domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain | |
PF20947 | Influenza RNA polymerase PB2 N-terminal region (Flu_PB2_1st) | Influenza RNA polymerase PB2 N-terminal region | - | Family | |
PF20949 | Influenza RNA polymerase PB2 middle domain (Flu_PB2_3rd) | Influenza RNA polymerase PB2 middle domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain | |
PF20951 | Influenza RNA polymerase PB2 6th domain (Flu_PB2_6th) | Influenza RNA polymerase PB2 6th domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain | |
PF20950 | Influenza RNA polymerase PB2 helical domain (Flu_PB2_4th) | Influenza RNA polymerase PB2 helical domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain | |
PF20952 | Influenza RNA polymerase PB2 C-terminal domain (Flu_PB2_7th) | Influenza RNA polymerase PB2 C-terminal domain | Influenza virus encodes a large, multidomain RNA-dependent RNA polymerase that can both transcribe and replicate the viral RNA genome. In influenza virus, the polymerase is composed of three polypeptides: PB1, PB2 and PA/P3. PB1 houses the polymerase ... | Domain | |
G [auth Y], H [auth G], J [auth X], K [auth I] | PF05001 | RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R) | RNA polymerase Rpb1 C-terminal repeat | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
G [auth Y], H [auth G], J [auth X], K [auth I] | SEP | Parent Component: SER :  AA0037 :  O-phospho-L-serine MOD:00046 |