pMMO structure from native membranes by cryoET and STA
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| C [auth A] | SCOP2B Superfamily | PapD-like | 8095933 | 3002067 | SCOP2B (2022-06-29) |
| C [auth A] | SCOP2B Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095934 | 3002711 | SCOP2B (2022-06-29) |
| C [auth A] | SCOP2B Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095935 | 3002712 | SCOP2B (2022-06-29) |
| F [auth E] | SCOP2B Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095934 | 3002711 | SCOP2B (2022-06-29) |
| F [auth E] | SCOP2B Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095935 | 3002712 | SCOP2B (2022-06-29) |
| F [auth E] | SCOP2B Superfamily | PapD-like | 8095933 | 3002067 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | PapD-like | 8095933 | 3002067 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Monooxygenase subunit B transmembrane domain-like | 8095934 | 3002711 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Monooxygenase subunit B C-terminal domain-like | 8095935 | 3002712 | SCOP2B (2022-06-29) |
| B [auth C] | SCOP2B Superfamily | Ammonia monooxygenase/methane monooxygenase, subunit C-like | 8053445 | 3002188 | SCOP2B (2022-06-29) |
| E [auth G] | SCOP2B Superfamily | Ammonia monooxygenase/methane monooxygenase, subunit C-like | 8053445 | 3002188 | SCOP2B (2022-06-29) |
| H [auth K] | SCOP2B Superfamily | Ammonia monooxygenase/methane monooxygenase, subunit C-like | 8053445 | 3002188 | SCOP2B (2022-06-29) |
| A [auth B] | SCOP2B Superfamily | Gx transporter-like | 8095951 | 3002268 | SCOP2B (2022-06-29) |
| D [auth F] | SCOP2B Superfamily | Gx transporter-like | 8095951 | 3002268 | SCOP2B (2022-06-29) |
| G [auth J] | SCOP2B Superfamily | Gx transporter-like | 8095951 | 3002268 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth A] | Monooxygenase_B_1st | e7yzyA3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_1st | ECOD (1.6) |
| C [auth A] | Monooxygenase_B_3rd | e7yzyA2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_3rd | ECOD (1.6) |
| C [auth A] | Monooxygenase_B_2nd | e7yzyA1 | A: alpha bundles | X: Long alpha-hairpin | H: PmoB helical hairpin (From Topology) | T: PmoB helical hairpin | F: Monooxygenase_B_2nd | ECOD (1.6) |
| F [auth E] | Monooxygenase_B_1st | e7yzyE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_1st | ECOD (1.6) |
| F [auth E] | Monooxygenase_B_3rd | e7yzyE2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_3rd | ECOD (1.6) |
| F [auth E] | Monooxygenase_B_2nd | e7yzyE3 | A: alpha bundles | X: Long alpha-hairpin | H: PmoB helical hairpin (From Topology) | T: PmoB helical hairpin | F: Monooxygenase_B_2nd | ECOD (1.6) |
| I | Monooxygenase_B_1st | e7yzyI3 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_1st | ECOD (1.6) |
| I | Monooxygenase_B_3rd | e7yzyI1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Monooxygenase_B_3rd | ECOD (1.6) |
| I | Monooxygenase_B_2nd | e7yzyI2 | A: alpha bundles | X: Long alpha-hairpin | H: PmoB helical hairpin (From Topology) | T: PmoB helical hairpin | F: Monooxygenase_B_2nd | ECOD (1.6) |
| B [auth C] | AmoC | e7yzyC1 | A: alpha bundles | X: STAT-like | H: Ammonia monooxygenase subunit C (From Topology) | T: Ammonia monooxygenase subunit C | F: AmoC | ECOD (1.6) |
| E [auth G] | AmoC | e7yzyG1 | A: alpha bundles | X: STAT-like | H: Ammonia monooxygenase subunit C (From Topology) | T: Ammonia monooxygenase subunit C | F: AmoC | ECOD (1.6) |
| H [auth K] | AmoC | e7yzyK1 | A: alpha bundles | X: STAT-like | H: Ammonia monooxygenase subunit C (From Topology) | T: Ammonia monooxygenase subunit C | F: AmoC | ECOD (1.6) |
| A [auth B] | AMO | e7yzyB1 | A: alpha bundles | X: PmoA (From Topology) | H: PmoA (From Topology) | T: PmoA | F: AMO | ECOD (1.6) |
| D [auth F] | AMO | e7yzyF1 | A: alpha bundles | X: PmoA (From Topology) | H: PmoA (From Topology) | T: PmoA | F: AMO | ECOD (1.6) |
| G [auth J] | AMO | e7yzyJ1 | A: alpha bundles | X: PmoA (From Topology) | H: PmoA (From Topology) | T: PmoA | F: AMO | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| C [auth A], F [auth E], I | PF04744 | Monooxygenase subunit B protein (Monooxygenase_B) | Monooxygenase subunit B protein | - | Family |
| A [auth B], D [auth F], G [auth J] | PF02461 | Ammonia monooxygenase (AMO) | Ammonia monooxygenase | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| C [auth A], F [auth E], I | Particulate methane monooxygenase alpha subunit | - | ||
| B [auth C], E [auth G], H [auth K] | Methane monooxygenase subunit C2 | - | ||
| A [auth B], D [auth F], G [auth J] | Particulate methane monooxygenase beta subunit | - |
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Methane monooxygenase | Methane monooxygenase |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |














