7YTE | pdb_00007yte

crystal structure of human FcmR-D1 bound to IgM C4-domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth C]	FAD_binding_4	e7yteC1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: FAD_binding_4	ECOD (v294.1)
C [auth D]	FAD_binding_4	e7yteD1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: FAD_binding_4	ECOD (v294.1)
B	FAD_binding_4	e7yteB1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: FAD_binding_4	ECOD (v294.1)
A	FAD_binding_4	e7yteA1	A: a/b three-layered sandwiches	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: FAD_binding_4	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D [auth C]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)
C [auth D]	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (utative)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth D], D [auth C]	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth D], D [auth C]	Fas apoptotic inhibitory molecule 3	protein-containing complex binding binding immunoglobulin binding IgM binding polymeric immunoglobulin binding IgM receptor activity molecular transducer activity immunoglobulin receptor activity transmembrane signaling receptor activity signaling receptor activity immune receptor activity high-affinity IgM receptor activity	localization multicellular organismal process transport cellular process establishment of localization immunoglobulin transcytosis in epithelial cells transcytosis vesicle-mediated transport regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process localization multicellular organismal process transport cellular process establishment of localization immunoglobulin transcytosis in epithelial cells transcytosis vesicle-mediated transport regulation of biological process regulation of cellular process negative regulation of programmed cell death regulation of apoptotic process biological regulation negative regulation of biological process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death import into cell Fc receptor-mediated immune complex endocytosis receptor-mediated endocytosis endocytosis response to stimulus defense response response to stress cellular defense response adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity humoral immune response immune response immunoglobulin mediated immune response adaptive immune response immune effector process humoral immune response mediated by circulating immunoglobulin immune system process B cell mediated immunity leukocyte mediated immunity cellular response to stimulus signaling signal transduction cell communication regulation of B cell receptor signaling pathway immune response-regulating cell surface receptor signaling pathway positive regulation of biological process regulation of antigen receptor-mediated signaling pathway regulation of signal transduction positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process regulation of signaling cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway B cell receptor signaling pathway regulation of response to stimulus regulation of immune response regulation of cell communication antigen receptor-mediated signaling pathway activation of immune response	vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm vacuolar membrane membrane-bounded organelle intracellular anatomical structure membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle cellular anatomical structure organelle lysosomal membrane cytoplasm organelle membrane lysosome Golgi apparatus endomembrane system extracellular region endosome membrane early endosome endosome intracellular vesicle early endosome membrane cytoplasmic vesicle membrane cytoplasmic vesicle vesicle membrane vesicle centrosome microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton Golgi apparatus subcompartment organelle subcompartment trans-Golgi network membrane trans-Golgi network cell periphery plasma membrane nucleus membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A, B	Ig mu chain C region secreted form	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth D], D [auth C]	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
C [auth D], D [auth C]	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C [auth D], D [auth C]	IPR013106	Immunoglobulin V-set domain	Domain
C [auth D], D [auth C]	IPR003599	Immunoglobulin domain subtype	Domain
C [auth D], D [auth C]	IPR050671	CD300 family immune receptors	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth D], D [auth C]	Pharos: O60667	nasopharyngeal carcinoma psoriasis atypical teratoid rhabdoid tumor Chemically-Induced Liver Toxicity glioblastoma interstitial cystitis lung cancer malignant glioma osteosarcoma Sjogren syndrome B-cell chronic lymphocytic leukemia cutaneous lupus erythematosus drug-induced liver injury invasive ductal breast carcinoma lymphoplasmacytic lymphoma nasopharyngeal carcinoma psoriasis atypical teratoid rhabdoid tumor Chemically-Induced Liver Toxicity glioblastoma interstitial cystitis lung cancer malignant glioma osteosarcoma Sjogren syndrome B-cell chronic lymphocytic leukemia cutaneous lupus erythematosus drug-induced liver injury invasive ductal breast carcinoma lymphoplasmacytic lymphoma medulloblastoma ovarian cancer ulcerative colitis ductal breast carcinoma in situ large cell medulloblastoma malignant ependymoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.