7YSG | pdb_00007ysg

Cryo-EM structure of human FcmR bound to sIgM


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
L [auth P]SCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054529 3000071 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
M [auth R]V-set_14e7ysgR1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_14ECOD (1.6)
N [auth S]V-set_14e7ysgS1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_14ECOD (1.6)
P [auth V]V-set_14e7ysgV1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_14ECOD (1.6)
O [auth U]V-set_14e7ysgU1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_14ECOD (1.6)
L [auth P]V-set_16e7ysgP3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_16ECOD (1.6)
L [auth P]V-set_14e7ysgP5 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: V-set_14ECOD (1.6)
AC1-sete7ysgA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
BC1-sete7ysgB1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
DC1-sete7ysgD1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
J [auth K]C1-sete7ysgK2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
K [auth L]C1-sete7ysgL1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
HC1-sete7ysgH1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
GC1-sete7ysgG2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
FC1-sete7ysgF2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
EC1-sete7ysgE2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)
CC1-sete7ysgC1 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: C1-setECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
M [auth R],
N [auth S],
O [auth U],
P [auth V]
PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
L [auth P]PF07686Immunoglobulin V-set domain (V-set)Immunoglobulin V-set domainThis domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. Domain
A,
B,
C,
D,
E,
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
M [auth R],
N [auth S],
O [auth U],
P [auth V]
Fas apoptotic inhibitory molecule 3
L [auth P]Secretory component
I [auth J]Immunoglobulin J chain
A,
B,
C,
D,
E,
Immunoglobulin heavy constant mu

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
M [auth R],
N [auth S],
O [auth U],
P [auth V]
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
M [auth R],
N [auth S],
O [auth U],
P [auth V]
IPR013783Immunoglobulin-like foldHomologous Superfamily
M [auth R],
N [auth S],
O [auth U],
P [auth V]
IPR013106Immunoglobulin V-set domainDomain
M [auth R],
N [auth S],
O [auth U],
P [auth V]
IPR003599Immunoglobulin domain subtypeDomain
M [auth R],
N [auth S],
O [auth U],
P [auth V]
IPR050671CD300 family immune receptorsFamily
L [auth P]IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
L [auth P]IPR013783Immunoglobulin-like foldHomologous Superfamily
L [auth P]IPR013106Immunoglobulin V-set domainDomain
L [auth P]IPR003599Immunoglobulin domain subtypeDomain
L [auth P]IPR007110Immunoglobulin-like domainDomain
L [auth P]IPR050671CD300 family immune receptorsFamily
I [auth J]IPR024110Immunoglobulin J chainFamily
A,
B,
C,
D,
E,
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A,
B,
C,
D,
E,
IPR050380Immune Recognition and Response ModulatorsFamily
A,
B,
C,
D,
E,
IPR003597Immunoglobulin C1-setDomain
A,
B,
C,
D,
E,
IPR013783Immunoglobulin-like foldHomologous Superfamily
A,
B,
C,
D,
E,
IPR007110Immunoglobulin-like domainDomain
A,
B,
C,
D,
E,
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
M [auth R],
N [auth S],
O [auth U],
P [auth V]
PharosO60667
L [auth P]PharosP01833
I [auth J]PharosP01591
A,
B,
C,
D,
E,
PharosP01871