7YR7 | pdb_00007yr7

Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with three RsmA protein dimers

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
AMR Gene: CARD Annotation
AMR Gene Family: CARD Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G [auth D]	SCOP2B Superfamily	CsrA-like	8043233	3000276	SCOP2B (2022-06-29)
F [auth C]	SCOP2B Superfamily	CsrA-like	8043233	3000276	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	CsrA-like	8043233	3000276	SCOP2B (2022-06-29)
C [auth G]	SCOP2B Superfamily	CsrA-like	8043233	3000276	SCOP2B (2022-06-29)
B [auth E]	SCOP2B Superfamily	CsrA-like	8043233	3000276	SCOP2B (2022-06-29)
A [auth F]	SCOP2B Superfamily	CsrA-like	8043233	3000276	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth D]	F_UNCLASSIFIED	e7yr7D1	A: beta duplicates or obligate multimers	X: CsrA-like (From Topology)	H: CsrA-like (From Topology)	T: CsrA-like	F: F_UNCLASSIFIED	ECOD (1.6)
F [auth C]	F_UNCLASSIFIED	e7yr7C1	A: beta duplicates or obligate multimers	X: CsrA-like (From Topology)	H: CsrA-like (From Topology)	T: CsrA-like	F: F_UNCLASSIFIED	ECOD (1.6)
D [auth B]	F_UNCLASSIFIED	e7yr7B1	A: beta duplicates or obligate multimers	X: CsrA-like (From Topology)	H: CsrA-like (From Topology)	T: CsrA-like	F: F_UNCLASSIFIED	ECOD (1.6)
C [auth G]	F_UNCLASSIFIED	e7yr7G1	A: beta duplicates or obligate multimers	X: CsrA-like (From Topology)	H: CsrA-like (From Topology)	T: CsrA-like	F: F_UNCLASSIFIED	ECOD (1.6)
B [auth E]	F_UNCLASSIFIED	e7yr7E1	A: beta duplicates or obligate multimers	X: CsrA-like (From Topology)	H: CsrA-like (From Topology)	T: CsrA-like	F: F_UNCLASSIFIED	ECOD (1.6)
A [auth F]	F_UNCLASSIFIED	e7yr7F1	A: beta duplicates or obligate multimers	X: CsrA-like (From Topology)	H: CsrA-like (From Topology)	T: CsrA-like	F: F_UNCLASSIFIED	ECOD (1.6)

AMR Gene: CARD Annotation CARD Database Homepage

Chains	Accession	Short Name	Description	Provenance Source (Version)
A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], G [auth D]	ARO:3005069	rsmA	rsmA is a gene that regulates virulence of Pseudomonas aeruginosa. However, its negative effect on MexEF-OprN overexpression has been noted to confer resistance to various antibiotics. It's Escherichia coli homolog is csrA.	CARD (4.0.1)

AMR Gene Family: CARD Annotation CARD Database Homepage

Chains	Accession	Gene Family	Drug Class	Resistance Machanism	Provenance Source (Version)
A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], G [auth D]	ARO:0010004	resistance-nodulation-cell division (RND) antibiotic efflux pump	fluoroquinolone antibiotic, diaminopyrimidine antibiotic, phenicol antibiotic	antibiotic efflux	CARD (4.0.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], G [auth D]	PF02599	Global regulator protein family (CsrA)	Global regulator protein family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth A]	RsmZ RNA (118-MER)	-	-	-
A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], G [auth D]	Translational regulator CsrA	RNA binding mRNA 5'-UTR binding binding nucleic acid binding mRNA binding	carbohydrate metabolic process regulation of biological process regulation of cellular process biological regulation primary metabolic process metabolic process cellular process regulation of carbohydrate metabolic process regulation of metabolic process regulation of primary metabolic process regulation of secondary metabolic process secondary metabolic process catabolic process negative regulation of biological process carbohydrate metabolic process regulation of biological process regulation of cellular process biological regulation primary metabolic process metabolic process cellular process regulation of carbohydrate metabolic process regulation of metabolic process regulation of primary metabolic process regulation of secondary metabolic process secondary metabolic process catabolic process negative regulation of biological process RNA metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process negative regulation of cellular process RNA catabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process mRNA catabolic process negative regulation of metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process mRNA metabolic process nucleic acid metabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process establishment of protein localization nitrogen compound transport transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein secretion by the type VI secretion system macromolecule localization intracellular protein localization cell aggregation biofilm formation regulation of single-species biofilm formation biological process involved in intraspecies interaction between organisms single-species biofilm formation aggregation of unicellular organisms response to stimulus signaling quorum sensing cell-cell signaling detection of cell density detection of biotic stimulus response to biotic stimulus cell communication detection of stimulus protein biosynthetic process post-transcriptional regulation of gene expression negative regulation of translation translational initiation protein metabolic process negative regulation of protein metabolic process regulation of translational initiation regulation of protein metabolic process negative regulation of translational initiation translation regulation of translation positive regulation of protein metabolic process positive regulation of biological process positive regulation of translation positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of gene expression positive regulation of translational initiation protein secretion by the type III secretion system	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], G [auth D]	IPR003751	Translational regulator CsrA	Family
A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], A [auth F], B [auth E], C [auth G], D [auth B], F [auth C], G [auth D]	IPR036107	Carbon storage regulator superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.