7YR6
Cryo-EM structure of Pseudomonas aeruginosa RsmZ RNA in complex with two RsmA protein dimers
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E] | SCOP2B Superfamily | CsrA-like | 8043233 | 3000276 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | CsrA-like | 8043233 | 3000276 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | CsrA-like | 8043233 | 3000276 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | CsrA-like | 8043233 | 3000276 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth E] | PF02599 | e7yr6E1 | A: beta duplicates or obligate multimers | X: CsrA-like (From Topology) | H: CsrA-like (From Topology) | T: CsrA-like | F: PF02599 | ECOD (1.6) |
B [auth D] | PF02599 | e7yr6D1 | A: beta duplicates or obligate multimers | X: CsrA-like (From Topology) | H: CsrA-like (From Topology) | T: CsrA-like | F: PF02599 | ECOD (1.6) |
C | PF02599 | e7yr6C1 | A: beta duplicates or obligate multimers | X: CsrA-like (From Topology) | H: CsrA-like (From Topology) | T: CsrA-like | F: PF02599 | ECOD (1.6) |
D [auth B] | PF02599 | e7yr6B1 | A: beta duplicates or obligate multimers | X: CsrA-like (From Topology) | H: CsrA-like (From Topology) | T: CsrA-like | F: PF02599 | ECOD (1.6) |
AMR Gene: CARD Annotation CARD Database Homepage
Chains | Accession | Short Name | Description | Provenance Source (Version) |
---|---|---|---|---|
A [auth E], B [auth D], C, D [auth B] | ARO:3005069 | rsmA | rsmA is a gene that regulates virulence of Pseudomonas aeruginosa. However, its negative effect on MexEF-OprN overexpression has been noted to confer resistance to various antibiotics. It's Escherichia coli homolog is csrA. | CARD (3.2.9) |
AMR Gene Family: CARD Annotation CARD Database Homepage
Chains | Accession | Gene Family | Drug Class | Resistance Machanism | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth E], B [auth D], C, D [auth B] | ARO:0010004 | resistance-nodulation-cell division (RND) antibiotic efflux pump | fluoroquinolone antibiotic, diaminopyrimidine antibiotic, phenicol antibiotic | antibiotic efflux | CARD (3.2.9) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth E], B [auth D], C, D [auth B] | PF02599 | Global regulator protein family (CsrA) | Global regulator protein family | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth E], B [auth D], C, D [auth B] | IPR003751 | Translational regulator CsrA | Family |
A [auth E], B [auth D], C, D [auth B] | IPR036107 | Carbon storage regulator superfamily | Homologous Superfamily |