7Y9I
Complex structure of AtYchF1 with ppGpp
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF06071 | e7y9iA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: PF06071 | ECOD (1.6) |
A | PF01926 | e7y9iA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF01926 | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01926 | 50S ribosome-binding GTPase (MMR_HSR1) | 50S ribosome-binding GTPase | - | Family | |
PF06071 | Protein of unknown function (DUF933) (YchF-GTPase_C) | Protein of unknown function (DUF933) | This domain is found at the C terminus of the YchF GTP-binding protein (Swiss:O13998) and is possibly related to the ubiquitin-like and MoaD/ThiS superfamilies. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR031167 | OBG-type guanine nucleotide-binding (G) domain | Domain | |
IPR012676 | TGS-like | Homologous Superfamily | |
IPR004095 | TGS | Domain | |
IPR004396 | Ribosome-binding ATPase YchF/Obg-like ATPase 1 | Family | |
IPR023192 | TGS-like domain superfamily | Homologous Superfamily | |
IPR013029 | YchF, C-terminal domain | Domain | |
IPR012675 | Beta-grasp domain superfamily | Homologous Superfamily | |
IPR006073 | GTP binding domain | Domain | |
IPR041706 | YchF, N-terminal | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |