Annotations: 7Y61

Cryo-EM structure of the two CAF1LCs bound right-handed Di-tetrasome

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I [auth B]	SCOP2B Superfamily	Core histone-like	8070545	3001387	SCOP2B (2022-06-29)
G [auth D]	SCOP2B Superfamily	Core histone-like	8070545	3001387	SCOP2B (2022-06-29)
D [auth F]	SCOP2B Superfamily	Core histone-like	8070545	3001387	SCOP2B (2022-06-29)
B [auth H]	SCOP2B Superfamily	Core histone-like	8070545	3001387	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
N	Asparaginase_2	e7y61N1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)
L	Asparaginase_2	e7y61L1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)
I [auth B]	Asparaginase_2	e7y61B1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)
G [auth D]	Asparaginase_2	e7y61D1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)
D [auth F]	Asparaginase_2	e7y61F1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)
B [auth H]	Asparaginase_2	e7y61H1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)
H [auth A]	Asparaginase_2	e7y61A1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)
F [auth C]	Asparaginase_2	e7y61C1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)
C [auth E]	Asparaginase_2	e7y61E1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)
A [auth G]	Asparaginase_2	e7y61G1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Asparaginase_2	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
L, N	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
L, N	Chromatin assembly factor 1 subunit B	protein binding binding histone binding chromatin binding	cellular component organization chromatin organization DNA replication-dependent chromatin assembly cellular process cellular component organization or biogenesis	protein-containing complex CAF-1 complex cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle protein-containing complex CAF-1 complex cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome
K, M	Chromatin assembly factor 1 subunit A	chromatin binding binding protein binding chromo shadow domain binding protein domain specific binding identical protein binding	cellular component organization chromatin organization DNA replication-dependent chromatin assembly cellular process cellular component organization or biogenesis	protein-containing complex CAF-1 complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen protein-containing complex CAF-1 complex membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cellular anatomical structure nucleoplasm organelle lumen organelle nuclear lumen membraneless organelle intracellular membraneless organelle chromatin chromosome
J	Widom 601 DNA (147-MER)	-	-	-
E [auth I]	Widom 601 DNA (147-MER)	-	-	-
B [auth H], D [auth F], G [auth D], I [auth B]	Histone H4	DNA binding binding nucleic acid binding protein heterodimerization activity protein binding protein dimerization activity RNA binding structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization organelle organization protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization organelle organization telomere organization chromosome organization localization protein localization to chromatin protein localization to chromosome protein localization to chromosome, centromeric region protein localization to organelle macromolecule localization protein localization to CENP-A containing chromatin intracellular protein localization multicellular organismal process regulation of cellular process regulation of developmental process cellular developmental process regulation of megakaryocyte differentiation negative regulation of biological process cell development megakaryocyte differentiation regulation of cell differentiation regulation of cell development multicellular organism development negative regulation of megakaryocyte differentiation cell differentiation negative regulation of cellular process anatomical structure development negative regulation of cell differentiation regulation of immune system process regulation of multicellular organismal process developmental process regulation of biological process regulation of multicellular organismal development negative regulation of developmental process hemopoiesis regulation of myeloid cell differentiation biological regulation negative regulation of myeloid cell differentiation myeloid cell differentiation immune system process regulation of hemopoiesis	cellular anatomical structure membrane extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure CENP-A containing chromatin protein-DNA complex cellular anatomical structure membrane extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure CENP-A containing chromatin protein-DNA complex intracellular membraneless organelle nucleosome chromosome chromatin chromosomal region intracellular organelle chromosome, centromeric core domain CENP-A containing nucleosome membraneless organelle chromosome, centromeric region chromosome, telomeric region nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A [auth G], C [auth E], F [auth C], H [auth A]	Histone H3.1	cell adhesion molecule binding cadherin binding protein binding binding DNA binding protein-containing complex binding chromatin binding nucleic acid binding nucleosome binding nucleosomal DNA binding chromatin DNA binding protein heterodimerization activity protein dimerization activity structural molecule activity cell adhesion molecule binding cadherin binding protein binding binding DNA binding protein-containing complex binding chromatin binding nucleic acid binding nucleosome binding nucleosomal DNA binding chromatin DNA binding protein heterodimerization activity protein dimerization activity structural molecule activity structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization organelle organization protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization organelle organization telomere organization chromosome organization regulation of cellular process negative regulation of biological process negative regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of biological process heterochromatin formation epigenetic regulation of gene expression negative regulation of metabolic process biological regulation heterochromatin organization regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of gene expression, epigenetic regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process	cellular anatomical structure membrane extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome cellular anatomical structure membrane extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle protein-containing complex intracellular anatomical structure protein-DNA complex nucleosome intracellular membraneless organelle chromatin chromosome intracellular organelle membraneless organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
L, N	IPR045145	Chromatin assembly factor 1 subunit Cac2/CHAF1B/FAS2	Family
L, N	IPR019775	WD40 repeat, conserved site	Conserved Site
L, N	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
L, N	IPR055410	CAF1B/HIR1, beta-propeller domain	Domain
L, N	IPR029129	Chromatin assembly factor 1 subunit B, C-terminal	Domain
L, N	IPR001632	G-protein beta subunit-like, WD40 repeats	Domain
L, N	IPR001680	WD40 repeat	Repeat
L, N	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
K, M	IPR029091	Chromatin assembly factor 1 subunit p150, N-terminal	Domain
K, M	IPR021644	Chromatin assembly factor 1 p150 subunit, acidic region	Domain
K, M	IPR029105	Chromatin assembly factor 1 subunit p150, C-terminal	Domain
K, M	IPR022043	Chromatin assembly factor 1 subunit A, dimerization domain	Domain
B [auth H], D [auth F], G [auth D], I [auth B]	IPR009072	Histone-fold	Homologous Superfamily
B [auth H], D [auth F], G [auth D], I [auth B]	IPR035425	CENP-T/Histone H4, histone fold	Domain
B [auth H], D [auth F], G [auth D], I [auth B]	IPR001951	Histone H4	Family
B [auth H], D [auth F], G [auth D], I [auth B]	IPR019809	Histone H4, conserved site	Conserved Site
B [auth H], D [auth F], G [auth D], I [auth B]	IPR004823	TATA box binding protein associated factor (TAF), histone-like fold domain	Domain
A [auth G], C [auth E], F [auth C], H [auth A]	IPR009072	Histone-fold	Homologous Superfamily
A [auth G], C [auth E], F [auth C], H [auth A]	IPR007125	Core Histone H2A/H2B/H3 domain	Domain
A [auth G], C [auth E], F [auth C], H [auth A]	IPR000164	Histone H3/CENP-A	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
L, N	: Q13112	mouth disease breast cancer lung adenocarcinoma Down syndrome hepatocellular carcinoma nephrolithiasis
K, M	: Q13111	mouth disease atypical teratoid rhabdoid tumor malignant colon neoplasm primitive neuroectodermal tumor large cell medulloblastoma malignant mesothelioma non-small cell lung carcinoma lung cancer medulloblastoma osteosarcoma
B [auth H], D [auth F], G [auth D], I [auth B]	: P62805	lung carcinoma Malignant neoplasm of breast non-small cell lung carcinoma Pick disease squamous cell lung carcinoma acute myeloid leukemia atypical teratoid rhabdoid tumor breast carcinoma ductal breast carcinoma in situ exocrine pancreatic carcinoma hepatocellular carcinoma lung adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm osteoarthritis lung carcinoma Malignant neoplasm of breast non-small cell lung carcinoma Pick disease squamous cell lung carcinoma acute myeloid leukemia atypical teratoid rhabdoid tumor breast carcinoma ductal breast carcinoma in situ exocrine pancreatic carcinoma hepatocellular carcinoma lung adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm osteoarthritis pilocytic astrocytoma ulcerative colitis allergic rhinitis autism spectrum disorder cystic fibrosis endogenous depression glioblastoma hypertensive disorder lung cancer malignant mesothelioma multiple sclerosis osteosarcoma psoriasis astrocytic tumor breast cancer diabetes mellitus endometriosis gout invasive ductal breast carcinoma
A [auth G], C [auth E], F [auth C], H [auth A]	: P68431	lung carcinoma glioblastoma glioma large cell medulloblastoma malignant mesothelioma non-small cell lung carcinoma allergic rhinitis ovarian cancer autism spectrum disorder psoriasis cutaneous lupus erythematosus tuberculosis ependymoma gastric carcinoma Glioma of Brain, Familial lung carcinoma glioblastoma glioma large cell medulloblastoma malignant mesothelioma non-small cell lung carcinoma allergic rhinitis ovarian cancer autism spectrum disorder psoriasis cutaneous lupus erythematosus tuberculosis ependymoma gastric carcinoma Glioma of Brain, Familial hypertensive disorder lung adenocarcinoma malignant colon neoplasm malignant pancreatic neoplasm osteoarthritis astrocytoma (excluding glioblastoma) pancreatic intraductal papillary-mucinous carcinoma breast cancer spina bifida cystic fibrosis exocrine pancreatic carcinoma glioma susceptibility 1 invasive ductal breast carcinoma lung cancer malignant glioma medulloblastoma osteosarcoma atypical teratoid rhabdoid tumor pancreatic intraductal papillary-mucinous neoplasm breast carcinoma subependymoma ductal breast carcinoma in situ gastric cancer hepatocellular carcinoma