7Y59
The cryo-EM structure of human ERAD retro-translocation complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A [auth W] | PF04511 | e7y59W1 | A: alpha bundles | X: Rhomboid-like (From Topology) | H: Rhomboid-like (From Topology) | T: Rhomboid-like | F: PF04511 | ECOD (1.6) |
B [auth X] | PF04511 | e7y59X1 | A: alpha bundles | X: Rhomboid-like (From Topology) | H: Rhomboid-like (From Topology) | T: Rhomboid-like | F: PF04511 | ECOD (1.6) |
C [auth Y] | PF04511 | e7y59Y1 | A: alpha bundles | X: Rhomboid-like (From Topology) | H: Rhomboid-like (From Topology) | T: Rhomboid-like | F: PF04511 | ECOD (1.6) |
D [auth Z] | PF04511 | e7y59Z1 | A: alpha bundles | X: Rhomboid-like (From Topology) | H: Rhomboid-like (From Topology) | T: Rhomboid-like | F: PF04511 | ECOD (1.6) |
E [auth A] | PF02359 | e7y59A5 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
E [auth A] | PF17862 | e7y59A3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
E [auth A] | PF02933 | e7y59A4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
E [auth A] | PF00004 | e7y59A6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
F [auth B] | PF02359 | e7y59B2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
F [auth B] | PF17862 | e7y59B5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
F [auth B] | PF02933 | e7y59B3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
F [auth B] | PF00004 | e7y59B1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
G [auth C] | PF02359 | e7y59C1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
G [auth C] | PF17862 | e7y59C3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
G [auth C] | PF02933 | e7y59C4 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
G [auth C] | PF00004 | e7y59C6 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
H [auth D] | PF02359 | e7y59D2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
H [auth D] | PF17862 | e7y59D6 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
H [auth D] | PF02933 | e7y59D3 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
H [auth D] | PF00004 | e7y59D4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
I [auth E] | PF02359 | e7y59E1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
I [auth E] | PF09336,PF17862 | e7y59E4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF09336,PF17862 | ECOD (1.6) |
I [auth E] | PF17862 | e7y59E5 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
I [auth E] | PF02933 | e7y59E2 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
I [auth E] | PF00004 | e7y59E3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
J [auth F] | PF02359 | e7y59F1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: double psi | F: PF02359 | ECOD (1.6) |
J [auth F] | PF09336,PF17862 | e7y59F4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF09336,PF17862 | ECOD (1.6) |
J [auth F] | PF17862 | e7y59F3 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF17862 | ECOD (1.6) |
J [auth F] | PF02933 | e7y59F5 | A: a+b two layers | X: Cdc48 domain 2-like (From Topology) | H: Cdc48 domain 2-like (From Topology) | T: Cdc48 domain 2-like | F: PF02933 | ECOD (1.6) |
J [auth F] | PF00004 | e7y59F2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00004 | ECOD (1.6) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth W], B [auth X], C [auth Y], D [auth Z] | IPR007599 | Derlin | Family |
A [auth W], B [auth X], C [auth Y], D [auth Z] | IPR035952 | Rhomboid-like superfamily | Homologous Superfamily |
IPR003959 | ATPase, AAA-type, core | Domain | |
IPR005938 | AAA ATPase, CDC48 family | Family | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR029067 | CDC48 domain 2-like superfamily | Homologous Superfamily | |
IPR003338 | CDC48, N-terminal subdomain | Domain | |
IPR004201 | CDC48, domain 2 | Domain | |
IPR009010 | Aspartate decarboxylase-like domain superfamily | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR041569 | AAA ATPase, AAA+ lid domain | Domain | |
IPR003960 | ATPase, AAA-type, conserved site | Conserved Site |