7Y59

The cryo-EM structure of human ERAD retro-translocation complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
A [auth W]PF04511e7y59W1 A: alpha bundlesX: Rhomboid-like (From Topology)H: Rhomboid-like (From Topology)T: Rhomboid-likeF: PF04511ECOD (1.6)
B [auth X]PF04511e7y59X1 A: alpha bundlesX: Rhomboid-like (From Topology)H: Rhomboid-like (From Topology)T: Rhomboid-likeF: PF04511ECOD (1.6)
C [auth Y]PF04511e7y59Y1 A: alpha bundlesX: Rhomboid-like (From Topology)H: Rhomboid-like (From Topology)T: Rhomboid-likeF: PF04511ECOD (1.6)
D [auth Z]PF04511e7y59Z1 A: alpha bundlesX: Rhomboid-like (From Topology)H: Rhomboid-like (From Topology)T: Rhomboid-likeF: PF04511ECOD (1.6)
E [auth A]PF02359e7y59A5 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
E [auth A]PF17862e7y59A3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
E [auth A]PF02933e7y59A4 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
E [auth A]PF00004e7y59A6 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
F [auth B]PF02359e7y59B2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
F [auth B]PF17862e7y59B5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
F [auth B]PF02933e7y59B3 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
F [auth B]PF00004e7y59B1 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
G [auth C]PF02359e7y59C1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
G [auth C]PF17862e7y59C3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
G [auth C]PF02933e7y59C4 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
G [auth C]PF00004e7y59C6 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
H [auth D]PF02359e7y59D2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
H [auth D]PF17862e7y59D6 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
H [auth D]PF02933e7y59D3 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
H [auth D]PF00004e7y59D4 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
I [auth E]PF02359e7y59E1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
I [auth E]PF09336,PF17862e7y59E4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF09336,PF17862ECOD (1.6)
I [auth E]PF17862e7y59E5 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
I [auth E]PF02933e7y59E2 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
I [auth E]PF00004e7y59E3 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)
J [auth F]PF02359e7y59F1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: double psiF: PF02359ECOD (1.6)
J [auth F]PF09336,PF17862e7y59F4 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF09336,PF17862ECOD (1.6)
J [auth F]PF17862e7y59F3 A: alpha arraysX: Histone-likeH: Histone-relatedT: AAA+ ATPase lid domainF: PF17862ECOD (1.6)
J [auth F]PF02933e7y59F5 A: a+b two layersX: Cdc48 domain 2-like (From Topology)H: Cdc48 domain 2-like (From Topology)T: Cdc48 domain 2-likeF: PF02933ECOD (1.6)
J [auth F]PF00004e7y59F2 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00004ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth W],
B [auth X],
C [auth Y],
D [auth Z]
Derlin-1
Transitional endoplasmic reticulum ATPase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth W],
B [auth X],
C [auth Y],
D [auth Z]
IPR007599DerlinFamily
A [auth W],
B [auth X],
C [auth Y],
D [auth Z]
IPR035952Rhomboid-like superfamilyHomologous Superfamily
IPR003959ATPase, AAA-type, coreDomain
IPR005938AAA ATPase, CDC48 familyFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
IPR003338CDC48, N-terminal subdomainDomain
IPR004201CDC48, domain 2Domain
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR003960ATPase, AAA-type, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth W],
B [auth X],
C [auth Y],
D [auth Z]
PharosQ9BUN8
PharosP55072