7Y53 | pdb_00007y53

The cryo-EM structure of human ERAD retro-translocation complex


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
J [auth F]TRAPPe7y53F1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)
I [auth E]TRAPPe7y53E1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)
H [auth D]TRAPPe7y53D1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)
G [auth C]TRAPPe7y53C1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)
F [auth B]TRAPPe7y53B1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)
E [auth A]TRAPPe7y53A1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)
D [auth Z]TRAPPe7y53Z1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)
C [auth Y]TRAPPe7y53Y1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)
B [auth X]TRAPPe7y53X1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)
A [auth W]TRAPPe7y53W1 A: alpha bundlesX: RNase A-likeH: RNase A-likeT: RNase A-likeF: TRAPPECOD (develop294)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02933Cell division protein 48 (CDC48), domain 2 (CDC48_2)Cell division protein 48 (CDC48), domain 2This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the C-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
PF17862AAA+ lid domain (AAA_lid_3)AAA+ lid domainThis entry represents the alpha helical AAA+ lid domain that is found to the C-terminus of AAA domains. Domain
PF02359Cell division protein 48 (CDC48), N-terminal domain (CDC48_N)Cell division protein 48 (CDC48), N-terminal domainThis domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at t ...This domain has a double psi-beta barrel fold and includes VCP-like ATPase and N-ethylmaleimide sensitive fusion protein N-terminal domains. Both the VAT and NSF N-terminal functional domains consist of two structural domains of which this is at the N-terminus. The VAT-N domain found in AAA ATPases Pfam:PF00004 is a substrate 185-residue recognition domain [1].
Domain
PF00004ATPase family associated with various cellular activities (AAA) (AAA)ATPase family associated with various cellular activities (AAA)AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes [2]. Domain
A [auth W],
B [auth X],
C [auth Y],
D [auth Z]
PF04511Der1-like family (DER1)Der1-like family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Transitional endoplasmic reticulum ATPase
A [auth W],
B [auth X],
C [auth Y],
D [auth Z]
Derlin-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR003959ATPase, AAA-type, coreDomain
IPR005938AAA ATPase, CDC48 familyFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR029067CDC48 domain 2-like superfamilyHomologous Superfamily
IPR003338CDC48, N-terminal subdomainDomain
IPR004201CDC48, domain 2Domain
IPR009010Aspartate decarboxylase-like domain superfamilyHomologous Superfamily
IPR003593AAA+ ATPase domainDomain
IPR041569AAA ATPase, AAA+ lid domainDomain
IPR050168AAA ATPase domain-containing proteinFamily
IPR003960ATPase, AAA-type, conserved siteConserved Site
A [auth W],
B [auth X],
C [auth Y],
D [auth Z]
IPR007599DerlinFamily
A [auth W],
B [auth X],
C [auth Y],
D [auth Z]
IPR035952Rhomboid-like superfamilyHomologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP55072
A [auth W],
B [auth X],
C [auth Y],
D [auth Z]
PharosQ9BUN8