7Y0D

Cryo-EM structure of the Mycobacterium smegmatis DNA integrity scanning protein (MsDisA).

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF12826	e7y0dA3	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF12826	ECOD (1.6)
A	PF10635	e7y0dA1	A: alpha bundles	X: DisA helical linker domain (From Topology)	H: DisA helical linker domain (From Topology)	T: DisA helical linker domain	F: PF10635	ECOD (1.6)
A	PF02457	e7y0dA2	A: a+b three layers	X: DisA nucleotide-binding domain (From Topology)	H: DisA nucleotide-binding domain (From Topology)	T: DisA nucleotide-binding domain	F: PF02457	ECOD (1.6)
C	PF12826	e7y0dC2	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF12826	ECOD (1.6)
C	PF10635	e7y0dC1	A: alpha bundles	X: DisA helical linker domain (From Topology)	H: DisA helical linker domain (From Topology)	T: DisA helical linker domain	F: PF10635	ECOD (1.6)
C	PF02457	e7y0dC3	A: a+b three layers	X: DisA nucleotide-binding domain (From Topology)	H: DisA nucleotide-binding domain (From Topology)	T: DisA nucleotide-binding domain	F: PF02457	ECOD (1.6)
D	PF12826	e7y0dD3	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF12826	ECOD (1.6)
D	PF10635	e7y0dD2	A: alpha bundles	X: DisA helical linker domain (From Topology)	H: DisA helical linker domain (From Topology)	T: DisA helical linker domain	F: PF10635	ECOD (1.6)
D	PF02457	e7y0dD1	A: a+b three layers	X: DisA nucleotide-binding domain (From Topology)	H: DisA nucleotide-binding domain (From Topology)	T: DisA nucleotide-binding domain	F: PF02457	ECOD (1.6)
F	PF12826	e7y0dF3	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF12826	ECOD (1.6)
F	PF10635	e7y0dF2	A: alpha bundles	X: DisA helical linker domain (From Topology)	H: DisA helical linker domain (From Topology)	T: DisA helical linker domain	F: PF10635	ECOD (1.6)
F	PF02457	e7y0dF1	A: a+b three layers	X: DisA nucleotide-binding domain (From Topology)	H: DisA nucleotide-binding domain (From Topology)	T: DisA nucleotide-binding domain	F: PF02457	ECOD (1.6)
G	PF12826	e7y0dG3	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF12826	ECOD (1.6)
G	PF10635	e7y0dG2	A: alpha bundles	X: DisA helical linker domain (From Topology)	H: DisA helical linker domain (From Topology)	T: DisA helical linker domain	F: PF10635	ECOD (1.6)
G	PF02457	e7y0dG1	A: a+b three layers	X: DisA nucleotide-binding domain (From Topology)	H: DisA nucleotide-binding domain (From Topology)	T: DisA nucleotide-binding domain	F: PF02457	ECOD (1.6)
H	PF12826	e7y0dH1	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF12826	ECOD (1.6)
H	PF10635	e7y0dH3	A: alpha bundles	X: DisA helical linker domain (From Topology)	H: DisA helical linker domain (From Topology)	T: DisA helical linker domain	F: PF10635	ECOD (1.6)
H	PF02457	e7y0dH2	A: a+b three layers	X: DisA nucleotide-binding domain (From Topology)	H: DisA nucleotide-binding domain (From Topology)	T: DisA nucleotide-binding domain	F: PF02457	ECOD (1.6)
B	PF12826	e7y0dB2	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF12826	ECOD (1.6)
B	PF10635	e7y0dB1	A: alpha bundles	X: DisA helical linker domain (From Topology)	H: DisA helical linker domain (From Topology)	T: DisA helical linker domain	F: PF10635	ECOD (1.6)
B	PF02457	e7y0dB3	A: a+b three layers	X: DisA nucleotide-binding domain (From Topology)	H: DisA nucleotide-binding domain (From Topology)	T: DisA nucleotide-binding domain	F: PF02457	ECOD (1.6)
E	PF12826	e7y0dE2	A: alpha arrays	X: HhH/H2TH	H: SAM/DNA-glycosylase	T: SAM domain-like	F: PF12826	ECOD (1.6)
E	PF10635	e7y0dE3	A: alpha bundles	X: DisA helical linker domain (From Topology)	H: DisA helical linker domain (From Topology)	T: DisA helical linker domain	F: PF10635	ECOD (1.6)
E	PF02457	e7y0dE1	A: a+b three layers	X: DisA nucleotide-binding domain (From Topology)	H: DisA nucleotide-binding domain (From Topology)	T: DisA nucleotide-binding domain	F: PF02457	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF12826	Helix-hairpin-helix motif (HHH_2)	Helix-hairpin-helix motif	-	Motif
A, B, C, D, E A, B, C, D, E, F, G, H	PF10635	DisA bacterial checkpoint controller linker region (DisA-linker)	DisA bacterial checkpoint controller linker region	The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. the first, N-terminal region, from 1-145 is globular and is represented by family DisA_N, Pfam:PF02457; the n ...	The DisA protein is a bacterial checkpoint protein that dimerises into an octameric complex. The protein consists of three distinct domains. the first, N-terminal region, from 1-145 is globular and is represented by family DisA_N, Pfam:PF02457; the next 146-289 residues is this domain that consists of an elongated bundle of three alpha helices (alpha-6, alpha-10, and alpha-11), one side of which carries an additional three helices (alpha7-9), thus forming a spine like-linker between domains 1 and 3. The C-terminal residues of domain 3 are family HHH, Pfam:PF00633, the specific DNA-binding domain. The octameric complex thus has structurally linked nucleotide-binding and DNA-binding HhH domains and the nucleotide-binding domains are bound to a cyclic di-adenosine phosphate such that DisA is a specific di-adenylate cyclase. The di-adenylate cyclase activity is strongly suppressed by binding to branched DNA, but not to duplex or single-stranded DNA, suggesting a role for DisA as a monitor of the presence of stalled replication forks or recombination intermediates via DNA structure-modulated c-di-AMP synthesis [1].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF02457	DisA bacterial checkpoint controller nucleotide-binding (DAC)	DisA bacterial checkpoint controller nucleotide-binding	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	DNA integrity scanning protein DisA	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding nucleic acid binding diadenylate cyclase activity transferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR041663	DisA/LigA, helix-hairpin-helix motif	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR010994	RuvA domain 2-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023763	DNA integrity scanning protein, DisA	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036888	DNA integrity scanning protein, DisA, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR018906	DNA integrity scanning, DisA, linker region	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003390	DNA integrity scanning protein, DisA, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR038331	DisA, linker domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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7Y0D

Cryo-EM structure of the Mycobacterium smegmatis DNA integrity scanning protein (MsDisA).

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage