7XVN | pdb_00007xvn

Structural basis for DNA recognition feature of retinoid-related orphan receptors

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E [auth C], F [auth D]	PF00105	Double treble clef zinc finger, C4 type (zf-C4)	Double treble clef zinc finger, C4 type	In nearly all cases, this is the DNA binding domain of a nuclear hormone receptor. The alignment contains two Zinc finger domains that are too dissimilar to be aligned with each other.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth P], H [auth F]	DNA (5'-D(PCPTPAPGPGPTPCPAPGPTPAPGPGPTPCPAPTPG)-3')	-	-	-
C [auth N], G [auth E]	DNA (5'-D(PCPAPTPGPAPCPCPTPAPCPTPGPAPCPCPTPAPG)-3')	-	-	-
A, B, E [auth C], F [auth D]	Nuclear receptor ROR-gamma	transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription factor binding transcription coregulator binding protein binding transcription coactivator binding nuclear receptor activity molecular transducer activity signaling receptor activity transcription regulator activity DNA-binding transcription factor activity sequence-specific DNA binding DNA binding binding nucleic acid binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription factor binding transcription coregulator binding protein binding transcription coactivator binding nuclear receptor activity molecular transducer activity signaling receptor activity ligand-modulated transcription factor activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	developmental process cellular developmental process cell differentiation cellular process connective tissue development adipose tissue development animal organ development anatomical structure development tissue development multicellular organismal process response to stimulus cell development mononuclear cell differentiation lymphocyte activation developmental process cellular developmental process cell differentiation cellular process connective tissue development adipose tissue development animal organ development anatomical structure development tissue development multicellular organismal process response to stimulus cell development mononuclear cell differentiation lymphocyte activation lymphocyte differentiation cell activation involved in immune response CD4-positive, alpha-beta T cell differentiation CD4-positive, alpha-beta T cell differentiation involved in immune response alpha-beta T cell differentiation involved in immune response leukocyte activation alpha-beta T cell differentiation T cell activation involved in immune response alpha-beta T cell activation involved in immune response T cell activation CD4-positive, alpha-beta T cell activation leukocyte activation involved in immune response alpha-beta T cell activation T cell differentiation lymphocyte activation involved in immune response T-helper cell differentiation immune response hemopoiesis cell activation T cell differentiation involved in immune response immune effector process immune system process leukocyte differentiation immune system development multicellular organism development lymph node development hematopoietic or lymphoid organ development system development mucosa-associated lymphoid tissue development regulation of biosynthetic process rhythmic process regulation of biological process regulation of cellular process circadian regulation of gene expression circadian rhythm biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process T cell differentiation in thymus regulation of leukocyte differentiation regulation of developmental process regulation of gamma-delta T cell differentiation regulation of leukocyte activation regulation of cell activation regulation of cell differentiation regulation of cell development regulation of T cell differentiation regulation of immune system process regulation of multicellular organismal process regulation of lymphocyte differentiation regulation of multicellular organismal development regulation of gamma-delta T cell activation gamma-delta T cell activation regulation of T cell activation gamma-delta T cell differentiation regulation of hemopoiesis regulation of lymphocyte activation positive regulation of circadian rhythm positive regulation of biological process regulation of circadian rhythm cellular response to stimulus cellular response to chemical stimulus response to chemical cellular response to xenobiotic stimulus xenobiotic metabolic process response to xenobiotic stimulus fat cell differentiation regulation of fat cell differentiation positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process regulation of DNA-templated transcription adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains adaptive immune response T-helper 17 cell differentiation T-helper 17 type immune response regulation of steroid metabolic process steroid metabolic process regulation of lipid metabolic process lipid metabolic process transcription by RNA polymerase II regulation of transcription by RNA polymerase II negative regulation of thymocyte apoptotic process leukocyte apoptotic process negative regulation of biological process regulation of programmed cell death lymphocyte apoptotic process thymocyte apoptotic process negative regulation of leukocyte apoptotic process negative regulation of cellular process regulation of T cell apoptotic process regulation of leukocyte apoptotic process regulation of lymphocyte apoptotic process negative regulation of programmed cell death regulation of apoptotic process cell death negative regulation of T cell apoptotic process negative regulation of apoptotic process regulation of thymocyte apoptotic process T cell apoptotic process apoptotic process programmed cell death negative regulation of lymphocyte apoptotic process monosaccharide metabolic process carbohydrate metabolic process hexose metabolic process regulation of small molecule metabolic process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process glucose metabolic process Peyer's patch development	cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle cell periphery cellular anatomical structure cell surface membrane plasma membrane external side of plasma membrane side of membrane membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E [auth C], F [auth D]	IPR001628	Zinc finger, nuclear hormone receptor-type	Domain
A, B, E [auth C], F [auth D]	IPR001723	Nuclear hormone receptor	Family
A, B, E [auth C], F [auth D]	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
A, B, E [auth C], F [auth D]	IPR044101	Retinoid-related orphan receptors, DNA-binding domain	Domain
A, B, E [auth C], F [auth D]	IPR003079	Nuclear receptor ROR	Family
A, B, E [auth C], F [auth D]	IPR000536	Nuclear hormone receptor, ligand-binding domain	Domain
A, B, E [auth C], F [auth D]	IPR035500	Nuclear hormone receptor-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.