PSI-LHCI-LHCII-Lhcb9 supercomplex of Physcomitrella patens
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8102497 | 3000850 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem I subunits PsaA/PsaB | 8102495 | 3000850 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Photosystem I subunit PsaD | 8102343 | 3000951 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Electron transport accessory proteins | 8102303 | 3000325 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Subunit III of photosystem I reaction centre, PsaF | 8102305 | 3000813 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Photosystem I reaction center subunit XI, PsaL | 8102341 | 3000870 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Subunit XII of photosystem I reaction centre, PsaM | 8102485 | 3000829 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Subunit VIII of photosystem I reaction centre, PsaI | 8102491 | 3000819 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Photosystem I reaction centre subunit VI | 8102647 | 3002733 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | 4Fe-4S ferredoxins | 8102489 | 3000020 | SCOP2B (2022-06-29) |
| T [auth 6] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8102307 | 3000343 | SCOP2B (2022-06-29) |
| P [auth 2] | SCOP2B Superfamily | Chlorophyll a-b binding protein | 8102307 | 3000343 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Subunit IX of photosystem I reaction centre, PsaJ | 8102487 | 3000824 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | F_UNCLASSIFIED | e7xqpA1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: F_UNCLASSIFIED | ECOD (1.6) |
| A | F_UNCLASSIFIED | e7xqpA2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: F_UNCLASSIFIED | ECOD (1.6) |
| B | F_UNCLASSIFIED | e7xqpB1 | A: alpha bundles | X: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology) | T: Bacterial photosystem II reaction centre L and M subunits-like | F: F_UNCLASSIFIED | ECOD (1.6) |
| B | F_UNCLASSIFIED | e7xqpB2 | A: alpha bundles | X: Photosystem II antenna protein-like (From Topology) | H: Photosystem II antenna protein-like (From Topology) | T: Photosystem II antenna protein-like | F: F_UNCLASSIFIED | ECOD (1.6) |
| D | F_UNCLASSIFIED | e7xqpD1 | A: a+b two layers | X: Photosystem I subunit PsaD (From Topology) | H: Photosystem I subunit PsaD (From Topology) | T: Photosystem I subunit PsaD | F: F_UNCLASSIFIED | ECOD (1.6) |
| E | F_UNCLASSIFIED | e7xqpE1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: F_UNCLASSIFIED | ECOD (1.6) |
| F | F_UNCLASSIFIED | e7xqpF1 | A: extended segments | X: Subunit III of photosystem I reaction centre, PsaF (From Topology) | H: Subunit III of photosystem I reaction centre, PsaF (From Topology) | T: Subunit III of photosystem I reaction centre, PsaF | F: F_UNCLASSIFIED | ECOD (1.6) |
| G | F_UNCLASSIFIED | e7xqpG1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: F_UNCLASSIFIED | ECOD (1.6) |
| K | F_UNCLASSIFIED | e7xqpK1 | A: alpha bundles | X: Photosystem I reaction center subunit X, PsaK (From Topology) | H: Photosystem I reaction center subunit X, PsaK (From Topology) | T: Photosystem I reaction center subunit X, PsaK | F: F_UNCLASSIFIED | ECOD (1.6) |
| L | F_UNCLASSIFIED | e7xqpL1 | A: alpha bundles | X: Photosystem I reaction center subunit XI, PsaL (From Topology) | H: Photosystem I reaction center subunit XI, PsaL (From Topology) | T: Photosystem I reaction center subunit XI, PsaL | F: F_UNCLASSIFIED | ECOD (1.6) |
| M | F_UNCLASSIFIED | e7xqpM1 | A: extended segments | X: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | H: Subunit XII of photosystem I reaction centre, PsaM (From Topology) | T: Subunit XII of photosystem I reaction centre, PsaM | F: F_UNCLASSIFIED | ECOD (1.6) |
| O [auth 1] | F_UNCLASSIFIED | e7xqp11 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| S [auth 5] | F_UNCLASSIFIED | e7xqp51 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| U [auth 7] | F_UNCLASSIFIED | e7xqp71 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| Q [auth 3] | F_UNCLASSIFIED | e7xqp31 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| W [auth 9] | F_UNCLASSIFIED | e7xqp91 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| X [auth a] | F_UNCLASSIFIED | e7xqpa1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| Y [auth b] | F_UNCLASSIFIED | e7xqpb1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| Z [auth c] | F_UNCLASSIFIED | e7xqpc1 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| I | F_UNCLASSIFIED | e7xqpI1 | A: extended segments | X: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | H: Subunit VIII of photosystem I reaction centre, PsaI (From Topology) | T: Subunit VIII of photosystem I reaction centre, PsaI | F: F_UNCLASSIFIED | ECOD (1.6) |
| H | F_UNCLASSIFIED | e7xqpH1 | A: extended segments | X: Subunit VI of Photosystem I reaction centre (From Topology) | H: Subunit VI of Photosystem I reaction centre (From Topology) | T: Subunit VI of Photosystem I reaction centre | F: F_UNCLASSIFIED | ECOD (1.6) |
| C | F_UNCLASSIFIED | e7xqpC1 | A: a+b two layers | X: 4Fe-4S ferredoxin (From Topology) | H: 4Fe-4S ferredoxin (From Topology) | T: 4Fe-4S ferredoxin | F: F_UNCLASSIFIED | ECOD (1.6) |
| R [auth 4] | F_UNCLASSIFIED | e7xqp41 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| V [auth 8] | F_UNCLASSIFIED | e7xqp81 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| T [auth 6] | F_UNCLASSIFIED | e7xqp61 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| P [auth 2] | F_UNCLASSIFIED | e7xqp21 | A: extended segments | X: Chlorophyll a-b binding protein (From Topology) | H: Chlorophyll a-b binding protein (From Topology) | T: Chlorophyll a-b binding protein | F: F_UNCLASSIFIED | ECOD (1.6) |
| J | F_UNCLASSIFIED | e7xqpJ1 | A: extended segments | X: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology) | T: Subunit IX of photosystem I reaction centre, PsaJ | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family | |
| PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family | |
| PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family | |
| PF00223 | Photosystem I psaA/psaB protein (PsaA_PsaB) | Photosystem I psaA/psaB protein | - | Family | |
| PF02531 | PsaD (PsaD) | PsaD | - | Family | |
| PF02427 | Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE) | Photosystem I reaction centre subunit IV / PsaE | PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. | Domain | |
| PF02507 | Photosystem I reaction centre subunit III (PSI_PsaF) | Photosystem I reaction centre subunit III | - | Family | |
| PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family | |
| PF01241 | Photosystem I psaG / psaK (PSI_PSAK) | Photosystem I psaG / psaK | - | Family | |
| PF02605 | Photosystem I reaction centre subunit XI (PsaL) | Photosystem I reaction centre subunit XI | - | Family | |
| PF07465 | Photosystem I protein M (PsaM) (PsaM) | Photosystem I protein M (PsaM) | - | Family | |
| O [auth 1], S [auth 5] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| Q [auth 3], U [auth 7] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| W [auth 9] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| PF00796 | Photosystem I reaction centre subunit VIII (PSI_8) | Photosystem I reaction centre subunit VIII | - | Family | |
| PF03244 | Photosystem I reaction centre subunit VI (PSI_PsaH) | Photosystem I reaction centre subunit VI | - | Family | |
| PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family | |
| PF12838 | 4Fe-4S dicluster domain (Fer4_7) | 4Fe-4S dicluster domain | Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ... | Domain | |
| R [auth 4], V [auth 8] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| P [auth 2], T [auth 6] | PF00504 | Chlorophyll A-B binding protein (Chloroa_b-bind) | Chlorophyll A-B binding protein | - | Family |
| N [auth O] | PF22832 | PsaO transmembrane domain (PsaO_TMD) | PsaO transmembrane domain | PsaO is one of the nine membrane-embedded subunits of photosystem I. This entry represents the transmembrane domain that was shown to consists of three transmembrane helices arranged in an L-shape [1]. | Domain |
| PF01701 | Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ) | Photosystem I reaction centre subunit IX / PsaJ | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem I |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| X [auth a], Y [auth b], Z [auth c] | TPO | Parent Component: THR :  AA0038 :  O-phospho-L-threonine MOD:00047 |














