Annotations: 7XED

Crystal Structure of OsCIE1-Ubox and OsUBC8 complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Peptidase_M27_Wo	e7xedD1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_M27_Wo	ECOD (v295)
B [auth C]	Serpin	e7xedC1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
C [auth B]	Serpin	e7xedB1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Serpin	ECOD (v295)
A	Peptidase_M27_Wo	e7xedA1	A: alpha arrays	X: RNase A-like	H: RNase A-like	T: RNase A-like	F: Peptidase_M27_Wo	ECOD (v295)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth C], D	PF04564	U-box domain (U-box)	U-box domain	The U-box is a domain of ~70 amino acids that is present in proteins from yeast to human. It consists of the beta-beta-alpha-beta-alpha- fold typical of U-box and RING domains. The central alpha helix is flanked by two prominent surface-exposed loop ...	The U-box is a domain of ~70 amino acids that is present in proteins from yeast to human. It consists of the beta-beta-alpha-beta-alpha- fold typical of U-box and RING domains. The central alpha helix is flanked by two prominent surface-exposed loop regions. This domain is one class of E3 ligases, involved in the ubiquitination process [1-3]. This domain is related to the Ring finger Pfam:PF00097 but lacks the zinc binding residues [4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth C], D	U-box domain-containing protein 12	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity catalytic activity ubiquitin-protein transferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity	primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A, C [auth B]	UBC core domain-containing protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ubiquitin conjugating enzyme activity aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein conjugating enzyme activity transferase activity catalytic activity ubiquitin-protein transferase activity	primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], D	IPR003613	U-box domain	Domain
B [auth C], D	IPR057623	PUB 12/19-like, N-terminal domain	Domain
B [auth C], D	IPR016024	Armadillo-type fold	Homologous Superfamily
B [auth C], D	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
B [auth C], D	IPR000225	Armadillo	Repeat
B [auth C], D	IPR045210	PUB protein, U-box domain, plant	Domain
B [auth C], D	IPR011989	Armadillo-like helical	Homologous Superfamily
B [auth C], D	IPR058678	U-box domain-containing protein-like, ARM repeat region	Domain
A, C [auth B]	IPR016135	Ubiquitin-conjugating enzyme/RWD-like	Homologous Superfamily
A, C [auth B]	IPR000608	Ubiquitin-conjugating (UBC), catalytic core domain	Domain
A, C [auth B]	IPR023313	Ubiquitin-conjugating enzyme, active site	Active Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

7XED | pdb_00007xed

Crystal Structure of OsCIE1-Ubox and OsUBC8 complex

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage