7XAQ | pdb_00007xaq

Cryo-EM structure of PvrA-DNA complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth D]	MIF4G	e7xaqD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
I [auth H]	MIF4G	e7xaqH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
H [auth C]	MIF4G	e7xaqC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
G	MIF4G	e7xaqG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
F [auth A]	MIF4G	e7xaqA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)
E [auth B]	MIF4G	e7xaqB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: MIF4G	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth B], F [auth A], G, H [auth C], I [auth H], E [auth B], F [auth A], G, H [auth C], I [auth H], J [auth D]	PF13305	Tetracyclin repressor-like, C-terminal domain (TetR_C_33)	Tetracyclin repressor-like, C-terminal domain	This domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved transcriptional regulation predicted to belong to the TetR family. This domain contains three conserv ...	This domain is around 80 amino acids in length. It is found to the C-terminus of a DNA-binding helix-turn-helix domain. This domain may be involved transcriptional regulation predicted to belong to the TetR family. This domain contains three conserved residues (WHG) near the C-terminus.	Domain
E [auth B], F [auth A], G, H [auth C], I [auth H], E [auth B], F [auth A], G, H [auth C], I [auth H], J [auth D]	PF00440	Bacterial regulatory proteins, tetR family (TetR_N)	Bacterial regulatory proteins, tetR family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth F], C [auth E]	fadD1	-	-	-
B [auth J], D [auth I]	fadD1	-	-	-
E [auth B], F [auth A], G, H [auth C], I [auth H], E [auth B], F [auth A], G, H [auth C], I [auth H], J [auth D]	Probable transcriptional regulator	DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding binding double-stranded DNA binding nucleic acid binding transcription regulatory region nucleic acid binding transcription regulator activity DNA-binding transcription factor activity	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth B], F [auth A], G, H [auth C], I [auth H], E [auth B], F [auth A], G, H [auth C], I [auth H], J [auth D]	IPR009057	Homedomain-like superfamily	Homologous Superfamily
E [auth B], F [auth A], G, H [auth C], I [auth H], E [auth B], F [auth A], G, H [auth C], I [auth H], J [auth D]	IPR050109	HTH-type, TetR-like transcriptional regulator	Family
E [auth B], F [auth A], G, H [auth C], I [auth H], E [auth B], F [auth A], G, H [auth C], I [auth H], J [auth D]	IPR001647	DNA-binding HTH domain, TetR-type	Domain
E [auth B], F [auth A], G, H [auth C], I [auth H], E [auth B], F [auth A], G, H [auth C], I [auth H], J [auth D]	IPR036271	Tetracyclin repressor-like, C-terminal domain superfamily	Homologous Superfamily
E [auth B], F [auth A], G, H [auth C], I [auth H], E [auth B], F [auth A], G, H [auth C], I [auth H], J [auth D]	IPR025996	HTH-type transcriptional regulator MT1864/Rv1816-like, C-terminal domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.