7WZN | pdb_00007wzn

PSI-LHCI from Chlamydomonas reinhardtii with bound ferredoxin


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
I [auth 3]SCOP2B SuperfamilyChlorophyll a-b binding protein 8105868 3000343 SCOP2B (2022-06-29)
H [auth 1]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
G [auth J]SCOP2B SuperfamilySubunit IX of photosystem I reaction centre, PsaJ 8094723 3000824 SCOP2B (2022-06-29)
FSCOP2B SuperfamilySubunit III of photosystem I reaction centre, PsaF 8094180 3000813 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyElectron transport accessory proteins 8094773 3000325 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyPhotosystem I subunit PsaD 8095071 3000951 SCOP2B (2022-06-29)
CSCOP2B Superfamily4Fe-4S ferredoxins 8093860 3000020 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094499 3000850 SCOP2B (2022-06-29)
O [auth 6]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099928 3000343 SCOP2B (2022-06-29)
N [auth 5]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099932 3000343 SCOP2B (2022-06-29)
M [auth 4]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099934 3000343 SCOP2B (2022-06-29)
L [auth Z]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099102 3000343 SCOP2B (2022-06-29)
K [auth 8]SCOP2B SuperfamilyChlorophyll a-b binding protein 8099930 3000343 SCOP2B (2022-06-29)
J [auth 7]SCOP2B SuperfamilyChlorophyll a-b binding protein 8100068 3000343 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyPhotosystem I subunits PsaA/PsaB 8094461 3000850 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
I [auth 3]Chloroa_b-binde7wzn31 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
H [auth 1]Chloroa_b-binde7wzn11 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
G [auth J]PSI_PsaJe7wznJ1 A: extended segmentsX: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)H: Subunit IX of photosystem I reaction centre, PsaJ (From Topology)T: Subunit IX of photosystem I reaction centre, PsaJF: PSI_PsaJECOD (1.6)
FPSI_PsaFe7wznF1 A: extended segmentsX: Subunit III of photosystem I reaction centre, PsaF (From Topology)H: Subunit III of photosystem I reaction centre, PsaF (From Topology)T: Subunit III of photosystem I reaction centre, PsaFF: PSI_PsaFECOD (1.6)
EPSI_PsaEe7wznE1 A: beta barrelsX: SH3H: SH3T: SH3F: PSI_PsaEECOD (1.6)
DPsaDe7wznD1 A: a+b two layersX: Photosystem I subunit PsaD (From Topology)H: Photosystem I subunit PsaD (From Topology)T: Photosystem I subunit PsaDF: PsaDECOD (1.6)
CFer4_21_1e7wznC1 A: a+b two layersX: 4Fe-4S ferredoxin (From Topology)H: 4Fe-4S ferredoxin (From Topology)T: 4Fe-4S ferredoxinF: Fer4_21_1ECOD (1.6)
BPsaA_PsaB_Ce7wznB2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
BPsaA_PsaB_Ne7wznB1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)
P [auth G]Fer2e7wznG1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: Fer2ECOD (1.6)
O [auth 6]Chloroa_b-binde7wzn61 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
N [auth 5]Chloroa_b-binde7wzn51 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
M [auth 4]Chloroa_b-binde7wzn41 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
L [auth Z]Chloroa_b-binde7wznZ1 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
K [auth 8]Chloroa_b-binde7wzn81 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
J [auth 7]Chloroa_b-binde7wzn71 A: extended segmentsX: Chlorophyll a-b binding protein (From Topology)H: Chlorophyll a-b binding protein (From Topology)T: Chlorophyll a-b binding proteinF: Chloroa_b-bindECOD (1.6)
APsaA_PsaB_Ce7wznA2 A: alpha bundlesX: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)H: Bacterial photosystem II reaction centre L and M subunits-like (From Topology)T: Bacterial photosystem II reaction centre L and M subunits-likeF: PsaA_PsaB_CECOD (1.6)
APsaA_PsaB_Ne7wznA1 A: alpha bundlesX: Photosystem II antenna protein-like (From Topology)H: Photosystem II antenna protein-like (From Topology)T: Photosystem II antenna protein-likeF: PsaA_PsaB_NECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
H [auth 1]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
G [auth J]PF01701Photosystem I reaction centre subunit IX / PsaJ (PSI_PsaJ)Photosystem I reaction centre subunit IX / PsaJ- Family
PF02427Photosystem I reaction centre subunit IV / PsaE (PSI_PsaE)Photosystem I reaction centre subunit IV / PsaEPsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane [1]. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains [1]. Domain
PF02531PsaD (PsaD)PsaD- Family
PF128384Fe-4S dicluster domain (Fer4_7)4Fe-4S dicluster domainSuperfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contai ...Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters.
Domain
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family
P [auth G]PF001112Fe-2S iron-sulfur cluster binding domain (Fer2)2Fe-2S iron-sulfur cluster binding domainDomain
O [auth 6]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
N [auth 5]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
M [auth 4]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
L [auth Z]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
K [auth 8]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
J [auth 7]PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00223Photosystem I psaA/psaB protein (PsaA_PsaB)Photosystem I psaA/psaB protein- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth 3]Chlorophyll a-b binding protein, chloroplastic
H [auth 1]Chlorophyll a-b binding protein, chloroplastic
G [auth J]Photosystem I reaction center subunit IX-
Photosystem I reaction center subunit III, chloroplastic-
Photosystem I reaction center subunit IV, chloroplastic-
Photosystem I reaction center subunit II, chloroplastic-
Photosystem I iron-sulfur center
Photosystem I P700 chlorophyll a apoprotein A2
P [auth G]Ferredoxin, chloroplastic
O [auth 6]Chlorophyll a-b binding protein, chloroplastic
N [auth 5]Chlorophyll a-b binding protein, chloroplastic
M [auth 4]Chlorophyll a-b binding protein, chloroplastic
L [auth Z]Chlorophyll a-b binding protein, chloroplastic
K [auth 8]Chlorophyll a-b binding protein, chloroplastic
J [auth 7]Chlorophyll a-b binding protein, chloroplastic
Photosystem I P700 chlorophyll a apoprotein A1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth 3]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
I [auth 3]IPR022796Chlorophyll A-B binding proteinFamily
H [auth 1]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
H [auth 1]IPR022796Chlorophyll A-B binding proteinFamily
G [auth J]IPR002615Photosystem I PsaJ, reaction centre subunit IXFamily
G [auth J]IPR036062Photosystem I PsaJ, reaction centre subunit IX superfamilyHomologous Superfamily
IPR036577Photosystem I PsaF, reaction centre subunit III superfamilyHomologous Superfamily
IPR003666Photosystem I PsaF, reaction centre subunit IIIFamily
IPR008990Electron transport accessory-like domain superfamilyHomologous Superfamily
IPR003375Photosystem I PsaE, reaction centre subunit IVFamily
IPR003685Photosystem I PsaDFamily
IPR036579Photosystem I, reaction centre subunit PsaD superfamilyHomologous Superfamily
IPR0179004Fe-4S ferredoxin, iron-sulphur binding, conserved siteConserved Site
IPR050157Photosystem I iron-sulfur centerFamily
IPR0178964Fe-4S ferredoxin-type, iron-sulphur binding domainDomain
IPR017491Photosystem I protein PsaCFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR006244Photosystem I PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site
P [auth G]IPR023383Ferredoxin, chloroplast transit peptideDomain
P [auth G]IPR0360102Fe-2S ferredoxin-like superfamilyHomologous Superfamily
P [auth G]IPR010241Ferredoxin [2Fe-2S], plantFamily
P [auth G]IPR0010412Fe-2S ferredoxin-type iron-sulfur binding domainDomain
P [auth G]IPR012675Beta-grasp domain superfamilyHomologous Superfamily
P [auth G]IPR0060582Fe-2S ferredoxin, iron-sulphur binding siteBinding Site
O [auth 6]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
O [auth 6]IPR022796Chlorophyll A-B binding proteinFamily
N [auth 5]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
N [auth 5]IPR022796Chlorophyll A-B binding proteinFamily
M [auth 4]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
M [auth 4]IPR022796Chlorophyll A-B binding proteinFamily
L [auth Z]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
L [auth Z]IPR022796Chlorophyll A-B binding proteinFamily
K [auth 8]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
K [auth 8]IPR022796Chlorophyll A-B binding proteinFamily
J [auth 7]IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
J [auth 7]IPR022796Chlorophyll A-B binding proteinFamily
IPR006243Photosystem I PsaAFamily
IPR036408Photosystem I PsaA/PsaB superfamilyHomologous Superfamily
IPR001280Photosystem I PsaA/PsaBFamily
IPR020586Photosystem I PsaA/PsaB, conserved siteConserved Site

Membrane Protein Annotation: OPM OPM Database Homepage

Membrane Protein Annotation: PDBTM PDBTM Database Homepage