7WUG

GID subcomplex: Gid12 bound Substrate Receptor Scaffolding module

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth 4]	PF09783	e7wug41	A: beta barrels	X: Lipocalins/Streptavidin	H: Avidin/Streptavidin (From Topology)	T: Avidin/Streptavidin	F: PF09783	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth 8]	PF10607	CTLH/CRA C-terminal to LisH motif domain (CTLH)	CTLH/CRA C-terminal to LisH motif domain	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which ...	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X messenger ribonucleoprotein 1 (FMRP), but its functional significance has yet to be determined [5]. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif [6].	Domain
C [auth 1]	PF00622	SPRY domain (SPRY)	SPRY domain	-	Family
C [auth 1]	PF10607	CTLH/CRA C-terminal to LisH motif domain (CTLH)	CTLH/CRA C-terminal to LisH motif domain	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which ...	RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X messenger ribonucleoprotein 1 (FMRP), but its functional significance has yet to be determined [5]. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif [6].	Domain
D [auth 4]	PF09783	Vacuolar import and degradation protein (Vac_ImportDeg)	Vacuolar import and degradation protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 5]	Vacuolar import and degradation protein 28	-	monosaccharide metabolic process negative regulation of small molecule metabolic process regulation of cellular process cellular biosynthetic process negative regulation of biological process gluconeogenesis negative regulation of cellular metabolic process regulation of primary metabolic process organic substance metabolic process negative regulation of gluconeogenesis regulation of small molecule metabolic process organic substance biosynthetic process negative regulation of cellular process small molecule metabolic process monosaccharide metabolic process negative regulation of small molecule metabolic process regulation of cellular process cellular biosynthetic process negative regulation of biological process gluconeogenesis negative regulation of cellular metabolic process regulation of primary metabolic process organic substance metabolic process negative regulation of gluconeogenesis regulation of small molecule metabolic process organic substance biosynthetic process negative regulation of cellular process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process negative regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process small molecule biosynthetic process negative regulation of metabolic process carbohydrate biosynthetic process cellular metabolic process biological regulation hexose metabolic process primary metabolic process monosaccharide biosynthetic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process hexose biosynthetic process biosynthetic process negative regulation of biosynthetic process regulation of gluconeogenesis metabolic process cellular process regulation of carbohydrate biosynthetic process regulation of metabolic process glucose metabolic process developmental process sexual sporulation resulting in formation of a cellular spore sexual reproduction cellular developmental process reproductive process reproductive process in single-celled organism meiotic cell cycle cell development developmental process involved in reproduction meiotic cell cycle process sporulation resulting in formation of a cellular spore anatomical structure morphogenesis ascospore formation sexual sporulation cell differentiation anatomical structure formation involved in morphogenesis anatomical structure development sporulation cell cycle cell cycle process organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process protein catabolic process in the vacuole	GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle vacuole
B [auth 8]	Glucose-induced degradation protein 8	-	monosaccharide metabolic process negative regulation of small molecule metabolic process regulation of cellular process cellular biosynthetic process negative regulation of biological process gluconeogenesis negative regulation of cellular metabolic process regulation of primary metabolic process organic substance metabolic process negative regulation of gluconeogenesis regulation of small molecule metabolic process organic substance biosynthetic process negative regulation of cellular process small molecule metabolic process monosaccharide metabolic process negative regulation of small molecule metabolic process regulation of cellular process cellular biosynthetic process negative regulation of biological process gluconeogenesis negative regulation of cellular metabolic process regulation of primary metabolic process organic substance metabolic process negative regulation of gluconeogenesis regulation of small molecule metabolic process organic substance biosynthetic process negative regulation of cellular process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process negative regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process small molecule biosynthetic process negative regulation of metabolic process carbohydrate biosynthetic process cellular metabolic process biological regulation hexose metabolic process primary metabolic process monosaccharide biosynthetic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process hexose biosynthetic process biosynthetic process negative regulation of biosynthetic process regulation of gluconeogenesis metabolic process cellular process regulation of carbohydrate biosynthetic process regulation of metabolic process glucose metabolic process cell cycle regulation of cell cycle phase transition traversing start control point of mitotic cell cycle positive regulation of biological process cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle phase transition positive regulation of cell cycle process positive regulation of mitotic cell cycle regulation of cell cycle positive regulation of cellular process cell cycle process positive regulation of G1/S transition of mitotic cell cycle regulation of cell cycle process positive regulation of cell cycle regulation of mitotic cell cycle phase transition positive regulation of cell cycle G1/S phase transition mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle positive regulation of cell cycle phase transition G1/S transition of mitotic cell cycle mitotic cell cycle phase transition organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process	GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
C [auth 1]	Vacuolar import and degradation protein 30	-	cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization response to nutrient levels regulation of response to nutrient levels regulation of biological process response to stimulus homeostatic process nitrogen utilization biological regulation regulation of nitrogen utilization cellular homeostasis cellular component organization organelle organization cellular process cellular component organization or biogenesis cytoskeleton organization response to nutrient levels regulation of response to nutrient levels regulation of biological process response to stimulus homeostatic process nitrogen utilization biological regulation regulation of nitrogen utilization cellular homeostasis chemical homeostasis regulation of response to stimulus intracellular nitrogen homeostasis intracellular chemical homeostasis monosaccharide metabolic process negative regulation of small molecule metabolic process regulation of cellular process cellular biosynthetic process negative regulation of biological process gluconeogenesis negative regulation of cellular metabolic process regulation of primary metabolic process organic substance metabolic process negative regulation of gluconeogenesis regulation of small molecule metabolic process organic substance biosynthetic process negative regulation of cellular process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process negative regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process small molecule biosynthetic process negative regulation of metabolic process carbohydrate biosynthetic process cellular metabolic process hexose metabolic process primary metabolic process monosaccharide biosynthetic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process hexose biosynthetic process biosynthetic process negative regulation of biosynthetic process regulation of gluconeogenesis metabolic process regulation of carbohydrate biosynthetic process regulation of metabolic process glucose metabolic process organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process	GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
D [auth 4]	Vacuolar import and degradation protein 24	-	monosaccharide metabolic process negative regulation of small molecule metabolic process regulation of cellular process cellular biosynthetic process negative regulation of biological process gluconeogenesis negative regulation of cellular metabolic process regulation of primary metabolic process organic substance metabolic process negative regulation of gluconeogenesis regulation of small molecule metabolic process organic substance biosynthetic process negative regulation of cellular process small molecule metabolic process monosaccharide metabolic process negative regulation of small molecule metabolic process regulation of cellular process cellular biosynthetic process negative regulation of biological process gluconeogenesis negative regulation of cellular metabolic process regulation of primary metabolic process organic substance metabolic process negative regulation of gluconeogenesis regulation of small molecule metabolic process organic substance biosynthetic process negative regulation of cellular process small molecule metabolic process regulation of carbohydrate metabolic process regulation of glucose metabolic process negative regulation of carbohydrate metabolic process regulation of biosynthetic process carbohydrate metabolic process regulation of biological process small molecule biosynthetic process negative regulation of metabolic process carbohydrate biosynthetic process cellular metabolic process biological regulation hexose metabolic process primary metabolic process monosaccharide biosynthetic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process hexose biosynthetic process biosynthetic process negative regulation of biosynthetic process regulation of gluconeogenesis metabolic process cellular process regulation of carbohydrate biosynthetic process regulation of metabolic process glucose metabolic process organonitrogen compound catabolic process ubiquitin-dependent protein catabolic process via the N-end rule pathway organonitrogen compound metabolic process catabolic process proteolysis involved in protein catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process protein localization establishment of protein localization cellular localization nitrogen compound transport transport protein targeting organic substance transport establishment of protein localization to vacuole protein localization to vacuole intracellular transport establishment of localization localization establishment of protein localization to organelle protein transport cellular macromolecule localization macromolecule localization protein localization to organelle establishment of localization in cell vacuolar transport protein targeting to vacuole intracellular protein transport protein catabolic process in the vacuole	membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane membrane-bounded organelle intracellular anatomical structure membrane intracellular vesicle cellular anatomical entity intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle membrane vesicle membrane cytoplasmic vesicle organelle cytoplasm vesicle organelle membrane cytosol GID complex protein-containing complex ubiquitin ligase complex catalytic complex transferase complex intracellular protein-containing complex vacuole
E [auth Y]	HLJ1_G0042170.mRNA.1.CDS.1	-	actin cortical patch organization actin cytoskeleton organization cortical cytoskeleton organization actin cortical patch assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly cortical actin cytoskeleton organization actin filament-based process cellular process cellular component organization or biogenesis cytoskeleton organization	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 5]	IPR011989	Armadillo-like helical	Homologous Superfamily
A [auth 5]	IPR016024	Armadillo-type fold	Homologous Superfamily
A [auth 5]	IPR038739	Armadillo-type fold containing protein ARMC8/Vid28	Family
B [auth 8]	IPR006595	CTLH, C-terminal LisH motif	Domain
B [auth 8]	IPR024964	CTLH/CRA C-terminal to LisH motif domain	Domain
B [auth 8]	IPR013144	CRA domain	Domain
C [auth 1]	IPR001870	B30.2/SPRY domain	Domain
C [auth 1]	IPR024964	CTLH/CRA C-terminal to LisH motif domain	Domain
C [auth 1]	IPR006595	CTLH, C-terminal LisH motif	Domain
C [auth 1]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
C [auth 1]	IPR044736	Ran-binding protein Vid30/RanBPM/SPLA, SPRY domain	Domain
C [auth 1]	IPR043136	B30.2/SPRY domain superfamily	Homologous Superfamily
C [auth 1]	IPR006594	LIS1 homology motif	Conserved Site
C [auth 1]	IPR013144	CRA domain	Domain
C [auth 1]	IPR003877	SPRY domain	Domain
D [auth 4]	IPR018618	Vacuolar import/degradation protein Vid24	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.