7WOT | pdb_00007wot

Cryo-EM structure of the inner ring monomer of the Saccharomyces cerevisiae nuclear pore complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
O [auth P]SCOP2B SuperfamilyScaffolding nucleoporins 8090959 3002255 SCOP2B (2022-06-29)
C [auth D]SCOP2B SuperfamilyScaffolding nucleoporins 8090959 3002255 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyScaffolding nucleoporins 8090960 3002255 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090971 3000456 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyNucleoporin beta-propeller domain 8090971 3000456 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyScaffolding nucleoporins 8090960 3002255 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyScaffolding nucleoporins 8090311 3002255 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyScaffolding nucleoporins 8090311 3002255 SCOP2B (2022-06-29)
X [auth Z]SCOP2B SuperfamilyScaffolding nucleoporins 8090311 3002255 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyScaffolding nucleoporins 8090311 3002255 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Q [auth R]Nup192_1ste7wotR1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Nup192_1stECOD (1.6)
Q [auth R]Nup192_2nde7wotR2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Nup192_2ndECOD (1.6)
E [auth F]Nup192_1ste7wotF1 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Nup192_1stECOD (1.6)
E [auth F]Nup192_2nde7wotF2 A: alpha superhelicesX: Repetitive alpha hairpinsH: ARM repeat (From Topology)T: ARM repeatF: Nup192_2ndECOD (1.6)
O [auth P]Nucleoporin_Ne7wotP2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
O [auth P]Nucleoporin_C_Ce7wotP1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
O [auth P]Nucleoporin_C_Ne7wotP3 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_NECOD (1.6)
C [auth D]Nucleoporin_Ne7wotD2 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
C [auth D]Nucleoporin_C_Ce7wotD1 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
C [auth D]Nucleoporin_C_Ne7wotD3 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_NECOD (1.6)
B [auth C]Nucleoporin_Ne7wotC1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
B [auth C]Nucleoporin_C_Ce7wotC2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
B [auth C]Nucleoporin_C_Ne7wotC3 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_NECOD (1.6)
N [auth O]Nucleoporin_Ne7wotO1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: Nucleoporin_NECOD (1.6)
N [auth O]Nucleoporin_C_Ce7wotO2 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_CECOD (1.6)
N [auth O]Nucleoporin_C_Ne7wotO3 A: alpha superhelicesX: Repetitive alpha hairpinsH: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domainsF: Nucleoporin_C_NECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
H [auth I],
K [auth L],
T [auth U],
W [auth X]
Nucleoporin NSP1
G [auth H],
J [auth K],
S [auth T],
V [auth W]
Nucleoporin NUP57
F [auth G],
I [auth J],
R [auth S],
U [auth V]
Nucleoporin NUP49/NSP49
E [auth F],
Q [auth R]
Nucleoporin NUP192
D [auth E],
P [auth Q]
Nucleoporin NUP188
C [auth D],
O [auth P]
Nucleoporin NUP170
B [auth C],
N [auth O]
Nucleoporin NUP157
A,
L [auth M],
M [auth N],
X [auth Z]
Nucleoporin NIC96

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth I],
K [auth L],
T [auth U],
W [auth X]
IPR007758Nucleoporin, NSP1-like, C-terminalDomain
H [auth I],
K [auth L],
T [auth U],
W [auth X]
IPR026010Nucleoporin NSP1/NUP62Family
G [auth H],
J [auth K],
S [auth T],
V [auth W]
IPR025574Nucleoporin FG repeatRepeat
G [auth H],
J [auth K],
S [auth T],
V [auth W]
IPR024864Nucleoporin Nup54/Nup57/Nup44Family
G [auth H],
J [auth K],
S [auth T],
V [auth W]
IPR025712Nucleoporin Nup54, alpha-helical domainDomain
F [auth G],
I [auth J],
R [auth S],
U [auth V]
IPR024882Nucleoporin p58/p45/NUP49Family
F [auth G],
I [auth J],
R [auth S],
U [auth V]
IPR025574Nucleoporin FG repeatRepeat
E [auth F],
Q [auth R]
IPR021827Nucleoporin Nup186/Nup192/Nup205Family
D [auth E],
P [auth Q]
IPR044840Nucleoporin Nup188Family
D [auth E],
P [auth Q]
IPR041634Nuclear pore protein Nup188, C-terminalDomain
D [auth E],
P [auth Q]
IPR048883Nucleoporin Nup188, N-terminal subdomain IIIDomain
D [auth E],
P [auth Q]
IPR018864Nucleoporin Nup188, N-terminalDomain
C [auth D],
O [auth P]
IPR042537Nucleoporin, Nup155-like, C-terminal, subdomain 2Homologous Superfamily
C [auth D],
O [auth P]
IPR042533Nucleoporin, Nup155-like, C-terminal, subdomain 1Homologous Superfamily
C [auth D],
O [auth P]
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
C [auth D],
O [auth P]
IPR004870Nucleoporin, Nup155-likeFamily
C [auth D],
O [auth P]
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
B [auth C],
N [auth O]
IPR042537Nucleoporin, Nup155-like, C-terminal, subdomain 2Homologous Superfamily
B [auth C],
N [auth O]
IPR042533Nucleoporin, Nup155-like, C-terminal, subdomain 1Homologous Superfamily
B [auth C],
N [auth O]
IPR014908Nucleoporin, Nup133/Nup155-like, N-terminalDomain
B [auth C],
N [auth O]
IPR004870Nucleoporin, Nup155-likeFamily
B [auth C],
N [auth O]
IPR007187Nucleoporin, Nup133/Nup155-like, C-terminalDomain
A,
L [auth M],
M [auth N],
X [auth Z]
IPR007231Nucleoporin interacting component Nup93/Nic96Family