Annotations: 7WKK

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	Nup58-like	8053258	3002169	SCOP2B (2022-06-29)
L [auth K]	SCOP2B Superfamily	Nup58-like	8053258	3002169	SCOP2B (2022-06-29)
V [auth i]	SCOP2B Superfamily	Nup58-like	8053258	3002169	SCOP2B (2022-06-29)
Y [auth k]	SCOP2B Superfamily	Nup58-like	8053258	3002169	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PF08801	e7wkkD3	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
D	PF03177	e7wkkD1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
F	PF08801	e7wkkF2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
F	PF03177	e7wkkF1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
Q [auth d]	PF08801	e7wkkd2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
Q [auth d]	PF03177	e7wkkd1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
S [auth f]	PF08801	e7wkkf2	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 7-bladed	F: PF08801	ECOD (1.6)
S [auth f]	PF03177	e7wkkf1	A: alpha superhelices	X: Repetitive alpha hairpins	H: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains (From Topology)	T: Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains	F: PF03177	ECOD (1.6)
AA [auth O]	PF00400	e7wkkO1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PF00400	ECOD (1.6)
CA [auth o]	PF00400	e7wkko1	A: beta duplicates or obligate multimers	X: beta-propeller-like	H: beta-propeller	T: 8-bladed	F: PF00400	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, N [auth a]	PF11894	Nuclear pore complex scaffold, nucleoporins 186/192/205 (Nup192)	Nuclear pore complex scaffold, nucleoporins 186/192/205	-	Repeat
B, O [auth b]	PF10487	Nucleoporin Nup188, N-terminal (Nup188_N)	Nucleoporin Nup188, N-terminal	-	Repeat
B, O [auth b]	PF21094	Nup188 SH3-like domain (Nup188_SH3-like)	Nup188 SH3-like domain	Nup188 is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes [1,2]. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically loca ...	Nup188 is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes [1,2]. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [3]. This protein folds into an extended stack of helices where the N-terminal forms a closed ring (subdivided into subdomains I-III in [2]) and the C-terminal forms a more regular, superhelical structure [2]. This entry represents a beta-stranded SH3-like domain inserted in subdomain III from Nup188 N-terminal region, which is a circular permutation from canonical SH3 domain [2].	Domain
C, E, P [auth c], R [auth e]	PF04097	Nup93/Nic96 (Nic96)	Nup93/Nic96	-	Repeat
D, F, M, Q [auth d], S [auth f], D, F, M, Q [auth d], S [auth f], Z [auth m]	PF08801	Nup133 N terminal like (Nucleoporin_N)	Nup133 N terminal like	-	Repeat
G, J, T [auth g], W [auth j]	PF13874	Nucleoporin complex subunit 54 (Nup54)	Nucleoporin complex subunit 54	This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and ...	This is the human Nup54 subunit of the nucleoporin complex, equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all have similar affinities for importin-beta. It seems likely that they are the only FG-repeat nucleoporins of the central channel, and as such they would form a zone of equal affinity spanning the central channel. The diffusion of importin-beta import complexes through the central channel may be a stochastic process as the affinities are similar, whereas movement from cytoplasmic fibrils to the central channel and from the central channel to the nuclear basket would be facilitated by the subtle differences in affinity between them [1,2].	Domain
H, K [auth L], U [auth h], X [auth l]	PF05064	Nsp1-like C-terminal region (Nsp1_C)	Nsp1-like C-terminal region	-	Family
I, L [auth K], V [auth i], Y [auth k]	PF15967	Nucleoporin FG repeated region (Nucleoporin_FG2)	Nucleoporin FG repeated region	-	Family
AA [auth O], CA [auth o]	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat
BA [auth N], DA [auth n]	PF09531	Nucleoporin protein Ndc1-Nup (Ndc1_Nup)	Nucleoporin protein Ndc1-Nup	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, N [auth a]	MGC83295 protein	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
B, O [auth b]	Nup188 domain-containing protein	structural molecule activity structural constituent of nuclear pore	RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization cellular localization protein transport cellular macromolecule localization cellular process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
C, E, P [auth c], R [auth e]	Nuclear pore complex protein Nup93	structural molecule activity structural constituent of nuclear pore	nuclear pore organization protein-containing complex organization pore complex assembly cellular component organization cellular component biogenesis nuclear pore complex assembly nucleus organization organelle organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis RNA transport nitrogen compound transport nuclear pore organization protein-containing complex organization pore complex assembly cellular component organization cellular component biogenesis nuclear pore complex assembly nucleus organization organelle organization cellular component assembly protein-containing complex assembly cellular process cellular component organization or biogenesis RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization cellular localization protein transport cellular macromolecule localization	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle organelle lumen organelle nuclear periphery nuclear lumen intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle organelle lumen organelle nuclear periphery nuclear lumen protein-containing complex nuclear protein-containing complex endomembrane system organelle envelope nuclear envelope nuclear pore nuclear membrane membrane organelle membrane
D, F, M, Q [auth d], S [auth f], D, F, M, Q [auth d], S [auth f], Z [auth m]	Nup155-prov protein	structural molecule activity structural constituent of nuclear pore	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
G, J, T [auth g], W [auth j]	Nup54	-	-	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
H, K [auth L], U [auth h], X [auth l]	IL4I1 protein	structural molecule activity structural constituent of nuclear pore	RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization cellular localization protein transport cellular macromolecule localization cellular process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
I, L [auth K], V [auth i], Y [auth k]	MGC84997 protein	structural molecule activity structural constituent of nuclear pore nuclear localization sequence binding signal sequence binding binding peptide binding	RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization cellular localization protein transport cellular macromolecule localization cellular process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore
AA [auth O], CA [auth o]	Aaas-prov protein	-	-	-
BA [auth N], DA [auth n]	Nucleoporin NDC1	-	RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization RNA transport nitrogen compound transport transport organic substance transport nucleic acid transport mRNA transport establishment of localization localization establishment of RNA localization macromolecule localization RNA localization nucleobase-containing compound transport protein localization establishment of protein localization cellular localization protein transport cellular macromolecule localization cellular process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore nuclear membrane membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore nuclear membrane membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, N [auth a]	IPR021827	Nucleoporin Nup186/Nup192/Nup205	Family
B, O [auth b]	IPR048883	Nucleoporin Nup188, N-terminal subdomain III	Domain
B, O [auth b]	IPR016024	Armadillo-type fold	Homologous Superfamily
B, O [auth b]	IPR044840	Nucleoporin Nup188	Family
B, O [auth b]	IPR018864	Nucleoporin Nup188, N-terminal	Domain
C, E, P [auth c], R [auth e]	IPR007231	Nucleoporin interacting component Nup93/Nic96	Family
D, F, M, Q [auth d], S [auth f], D, F, M, Q [auth d], S [auth f], Z [auth m]	IPR042537	Nucleoporin, Nup155-like, C-terminal, subdomain 2	Homologous Superfamily
D, F, M, Q [auth d], S [auth f], D, F, M, Q [auth d], S [auth f], Z [auth m]	IPR014908	Nucleoporin, Nup133/Nup155-like, N-terminal	Domain
D, F, M, Q [auth d], S [auth f], D, F, M, Q [auth d], S [auth f], Z [auth m]	IPR042533	Nucleoporin, Nup155-like, C-terminal, subdomain 1	Homologous Superfamily
D, F, M, Q [auth d], S [auth f], D, F, M, Q [auth d], S [auth f], Z [auth m]	IPR004870	Nucleoporin, Nup155-like	Family
D, F, M, Q [auth d], S [auth f], D, F, M, Q [auth d], S [auth f], Z [auth m]	IPR042538	Nucleoporin, Nup155-like, C-terminal, subdomain 3	Homologous Superfamily
D, F, M, Q [auth d], S [auth f], D, F, M, Q [auth d], S [auth f], Z [auth m]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
D, F, M, Q [auth d], S [auth f], D, F, M, Q [auth d], S [auth f], Z [auth m]	IPR007187	Nucleoporin, Nup133/Nup155-like, C-terminal	Domain
G, J, T [auth g], W [auth j]	IPR025712	Nucleoporin Nup54, alpha-helical domain	Domain
G, J, T [auth g], W [auth j]	IPR040985	Nup54, C-terminal interacting domain	Domain
G, J, T [auth g], W [auth j]	IPR024864	Nucleoporin Nup54/Nup57/Nup44	Family
H, K [auth L], U [auth h], X [auth l]	IPR007758	Nucleoporin, NSP1-like, C-terminal	Domain
H, K [auth L], U [auth h], X [auth l]	IPR026010	Nucleoporin NSP1/NUP62	Family
I, L [auth K], V [auth i], Y [auth k]	IPR024882	Nucleoporin p58/p45/NUP49	Family
AA [auth O], CA [auth o]	IPR045139	Aladin	Family
AA [auth O], CA [auth o]	IPR001680	WD40 repeat	Repeat
AA [auth O], CA [auth o]	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
AA [auth O], CA [auth o]	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
BA [auth N], DA [auth n]	IPR019049	Nucleoporin protein Ndc1-Nup	Family